Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1473 214 2e-50 seq5010 107 2e-18 >seq1473 Length=14027634 Score = 214 bits (236), Expect = 2e-50 Identities = 449/669 (67%), Gaps = 3/669 (0%) Strand=Plus/Plus Query 20153 CGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAAC 20212 |||| ||||||| |||||||| | || | ||| ||||| ||||||||||| Sbjct 9372581 CGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAA 9372640 Query 20213 GTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGG 20272 ||||| | || || || || | || || || | || |||| ||| || || | || Sbjct 9372641 GTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGA 9372700 Query 20273 GAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGC 20332 || |||||||| ||||| || || || |||| ||||||||||| |||| || ||||||| Sbjct 9372701 GAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGC 9372760 Query 20333 TGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGC 20392 || ||||| |||||||||| | || || || || || | || ||||| || || Sbjct 9372761 TGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGTGGGAGG 9372820 Query 20393 GCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGA 20452 ||| | | || | || || ||||| |||||||| ||||||||||| || | || Sbjct 9372821 GCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGATGATTCTTCTGTCATTAGGG 9372880 Query 20453 TTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCA 20512 || |||| ||| || | | | || |||||| | || | ||||| ||| || Sbjct 9372881 TTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCT 9372940 Query 20513 GCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCC 20572 | ||||| || |||| | |||||||| ||||||||||| || | ||| || || || Sbjct 9372941 GAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCT 9373000 Query 20573 AAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTT 20632 | ||| || || |||| | | || | | | ||| || | | ||| ||| | Sbjct 9373001 AGATCTCCTTC---TCTGGTGGAGAATCCCAGGCTGTCCAAGACGCCTCGGGACCCACTG 9373057 Query 20633 TTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGA 20692 |||||| || || ||||| | || |||||| | | || || ||||| | | Sbjct 9373058 GCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATA 9373117 Query 20693 AACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGA 20752 ||||| |||| || | || || || ||| || || || || || || || | ||| Sbjct 9373118 AACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGA 9373177 Query 20753 AAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCG 20812 || | || | || || || | ||||||||||| || | || |||||||| |||| Sbjct 9373178 AATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCC 9373237 Query 20813 GTGCGGTCG 20821 ||||||||| Sbjct 9373238 GTGCGGTCG 9373246 >seq5010 Length=10235142 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | ||||| |||||||| ||||| || || || |||| ||| Sbjct 3047437 TGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 3047378 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||||||||||| ||| |||||||| ||||| |||||||||| | || || || || Sbjct 3047377 ATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 3047318 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCAT 20397 || | ||| |||||||| || ||||| Sbjct 3047317 CAAAGGGCGTGGCAGGGCGGGAGGGCCAT 3047289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441177189092200