Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3552 100 3e-16 seq6122 91.5 2e-13 seq8041 89.7 6e-13 seq4303 89.7 6e-13 seq1692 89.7 6e-13 seq6813 87.8 2e-12 seq1683 86.0 7e-12 seq3939 82.4 8e-11 seq1720 82.4 8e-11 >seq3552 Length=199577 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||| || ||||||||||| || | |||| || | || || Sbjct 80756 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTC 80815 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || | || || || || |||||||||| | ||| | || ||||||||| Sbjct 80816 CAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 80875 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 |||||| ||||| || | ||||| || | || || || | |||||||| || Sbjct 80876 GATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 80935 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | || ||||| ||||||| ||||| Sbjct 80936 GCCCATCAGGGTCTTCACAAAGACCTGCAT 80965 >seq6122 Length=7170238 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2183557 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2183498 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 2183497 ATACTAACGAGGA 2183485 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4037847 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4037788 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4037787 ATACTAACGAGGA 4037775 >seq8041 Length=9355897 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8409297 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8409356 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 8409357 TACTAACGAGGA 8409368 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8416170 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8416229 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 8416230 TACTAACGAGGA 8416241 >seq4303 Length=2400573 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2400069 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2400128 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2400129 TACTAACGAGGA 2400140 >seq1692 Length=15556111 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1419758 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1419817 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1419818 TACTAACGAGGA 1419829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| |||||| |||||||||||||| |||||||||||| Sbjct 1376188 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCTCGCGTGACAGGCGGGGATACTCACCACT 1376129 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 1376128 ATACTAACGAGGAATG 1376113 >seq6813 Length=4142589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1036303 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1036362 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1036363 ATACTAACGAGGA 1036375 >seq1683 Length=8760594 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| | | ||||| | ||| |||| | | |||||| | |||| || Sbjct 1155919 CACCAAGTGCAGGGCGGACTCCT---GGATACTGTAGTGTGACAGAGTGTCCCCGTCCTC 1155975 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || || || || || || |||||||||| | || | || ||||||||| Sbjct 1155976 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 1156035 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||| ||||| || | ||||| || | || || ||| ||||||| || Sbjct 1156036 GGTTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACC-CGAGGGTGATGGCCTT 1156094 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| ||||| |||||||| ||||| Sbjct 1156095 GCCCGTTAGGGTCTTCACAAAGATCTGCAT 1156124 >seq3939 Length=6707506 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | || ||||||| |||||||||||||||| ||||| ||||| ||| Sbjct 39204 TTGTCTCCCCGTCGGGGAAGCGAACCCCGGTCTCCCGCGTGACAAGCGGAGATACTTACC 39145 Query 57063 ACTATACTACCGAGG 57077 ||||||||| ||||| Sbjct 39144 ACTATACTAACGAGG 39130 >seq1720 Length=6396105 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| |||||||| || || | | | || || | ||||| ||||| | || ||||| Sbjct 3282194 CCTTCTGAATATTCTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAAAC 3282253 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | ||| | || ||||||||| ||||||| | ||| || Sbjct 3282254 TCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTTGATTTTAGCTCTGACATTCT 3282313 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | ||||| | | || || |||| |||| ||| |||||| | || |||| |||| Sbjct 3282314 CAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAGGGTCTTGCCCATCAGGCTCTTCACAA 3282373 Query 42199 AGA 42201 ||| Sbjct 3282374 AGA 3282376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542972054877200