Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3552 100 3e-16
seq6122 91.5 2e-13
seq8041 89.7 6e-13
seq4303 89.7 6e-13
seq1692 89.7 6e-13
seq6813 87.8 2e-12
seq1683 86.0 7e-12
seq3939 82.4 8e-11
seq1720 82.4 8e-11
>seq3552
Length=199577
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||| ||| ||| || ||||||||||| || | |||| || | || ||
Sbjct 80756 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTC 80815
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
||||| || | || || || || |||||||||| | ||| | || |||||||||
Sbjct 80816 CAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 80875
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
|||||| ||||| || | ||||| || | || || || | |||||||| ||
Sbjct 80876 GATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 80935
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| | || ||||| ||||||| |||||
Sbjct 80936 GCCCATCAGGGTCTTCACAAAGACCTGCAT 80965
>seq6122
Length=7170238
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2183557 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2183498
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 2183497 ATACTAACGAGGA 2183485
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 4037847 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4037788
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 4037787 ATACTAACGAGGA 4037775
>seq8041
Length=9355897
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 8409297 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8409356
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 8409357 TACTAACGAGGA 8409368
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 8416170 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8416229
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 8416230 TACTAACGAGGA 8416241
>seq4303
Length=2400573
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2400069 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2400128
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 2400129 TACTAACGAGGA 2400140
>seq1692
Length=15556111
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1419758 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1419817
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 1419818 TACTAACGAGGA 1419829
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1376188 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCTCGCGTGACAGGCGGGGATACTCACCACT 1376129
Query 57066 ATACTACCGAGGATTG 57081
|||||| |||||| ||
Sbjct 1376128 ATACTAACGAGGAATG 1376113
>seq6813
Length=4142589
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1036303 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1036362
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 1036363 ATACTAACGAGGA 1036375
>seq1683
Length=8760594
Score = 86.0 bits (94), Expect = 7e-12
Identities = 146/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||| |||| | | ||||| | ||| |||| | | |||||| | |||| ||
Sbjct 1155919 CACCAAGTGCAGGGCGGACTCCT---GGATACTGTAGTGTGACAGAGTGTCCCCGTCCTC 1155975
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
||||| || || || || || || |||||||||| | || | || |||||||||
Sbjct 1155976 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 1156035
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| |||| ||||| || | ||||| || | || || ||| ||||||| ||
Sbjct 1156036 GGTTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACC-CGAGGGTGATGGCCTT 1156094
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||||||| ||||| |||||||| |||||
Sbjct 1156095 GCCCGTTAGGGTCTTCACAAAGATCTGCAT 1156124
>seq3939
Length=6707506
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
|| ||||| || | | || ||||||| |||||||||||||||| ||||| ||||| |||
Sbjct 39204 TTGTCTCCCCGTCGGGGAAGCGAACCCCGGTCTCCCGCGTGACAAGCGGAGATACTTACC 39145
Query 57063 ACTATACTACCGAGG 57077
||||||||| |||||
Sbjct 39144 ACTATACTAACGAGG 39130
>seq1720
Length=6396105
Score = 82.4 bits (90), Expect = 8e-11
Identities = 128/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| |||||||| || || | | | || || | ||||| ||||| | || |||||
Sbjct 3282194 CCTTCTGAATATTCTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAAAC 3282253
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | ||| | || ||||||||| ||||||| | ||| ||
Sbjct 3282254 TCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTTGATTTTAGCTCTGACATTCT 3282313
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| ||||| | | || || |||| |||| ||| |||||| | || |||| ||||
Sbjct 3282314 CAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAGGGTCTTGCCCATCAGGCTCTTCACAA 3282373
Query 42199 AGA 42201
|||
Sbjct 3282374 AGA 3282376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542972054877200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |