Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8041 105 6e-18 seq459 98.7 9e-16 seq2669 95.1 1e-14 seq4088 87.8 2e-12 seq3552 86.0 6e-12 >seq8041 Length=9355897 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||| |||| ||||| || | || || || || || || ||||| || | Sbjct 8398515 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 8398574 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| ||||||| | |||||| || || || Sbjct 8398575 AGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8398634 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||| ||| ||||| | |||| |||||| | ||| || Sbjct 8398635 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 8398694 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || |||| || || || || ||||||||| Sbjct 8398695 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8398742 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || || ||||| | Sbjct 8398983 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8399042 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || ||||||| | |||||| || || || |||||||||||| Sbjct 8399043 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 8399102 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| ||| ||||| | |||| |||||| | ||| || || | ||| | Sbjct 8399103 TCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 8399162 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || |||| || || || || ||||||||| Sbjct 8399163 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8399198 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || || ||||| | Sbjct 8399211 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8399270 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || ||||||| | |||||| || || || |||||||||||| Sbjct 8399271 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 8399330 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| ||| ||||| | |||| |||||| | ||| || || | ||| | Sbjct 8399331 TCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 8399390 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || |||| || || || || ||||||||| Sbjct 8399391 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8399426 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || || ||||| | Sbjct 8399439 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8399498 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || ||||||| | |||||| || || || |||||||||||| Sbjct 8399499 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 8399558 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| ||| ||||| | |||| |||||| | ||| || || | ||| | Sbjct 8399559 TCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 8399618 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || |||| || || || || ||||||||| Sbjct 8399619 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8399654 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || || ||||| | Sbjct 8399667 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8399726 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || ||||||| | |||||| || || || |||||||||||| Sbjct 8399727 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 8399786 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| ||| ||||| | |||| |||||| | ||| || || | ||| | Sbjct 8399787 TCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 8399846 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || |||| || || || || ||||||||| Sbjct 8399847 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8399882 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 8398755 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 8398814 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || ||||||| | |||||| || || || |||||||||||| Sbjct 8398815 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTG 8398874 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| ||| ||||| | |||| |||||| | ||| || || | ||| | Sbjct 8398875 TCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 8398934 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || |||| || || || || ||||||||| Sbjct 8398935 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8398970 >seq459 Length=3563100 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 2214315 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2214256 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | | |||||| || ||||| ||||||||||| ||| ||| || ||| Sbjct 2214255 GCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 2214196 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 2214195 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 2214136 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 2214135 TTCACGAAGATCTGCAT 2214119 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || |||||||| | ||||| | Sbjct 2214105 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 2214046 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | | |||||| || ||||| ||||| ||||| Sbjct 2214045 TCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 2213986 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| || ||| || || | ||| | Sbjct 2213985 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATG 2213926 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 2213925 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2213891 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || |||||||| | ||||| | Sbjct 2213877 CGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 2213818 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | | |||||| || ||||| ||||||||||| Sbjct 2213817 TCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTA 2213758 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | |||| |||||| | ||| || || | ||| | Sbjct 2213757 TCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 2213698 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || || || |||||||| Sbjct 2213697 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2213663 >seq2669 Length=6508339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAA---TATTGTAATCGCCCATCGTGCGAGAATC 126960 ||| || || | || ||||| || |||| ||||||| || || |||| ||| Sbjct 4562103 CACTAAGTGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCTGACAGAGTGCAGCCATC 4562044 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 ||||||||||| || | | |||| |||||||||| || || |||||||||||||| Sbjct 4562043 CTCTAGCTGTTTGCCCACAAAAATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTTGTC 4561984 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 | |||||| |||| | || |||||| | ||| || |||| ||| | || Sbjct 4561983 CTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 4561924 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||||| || || ||||| |||||||| Sbjct 4561923 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4561891 >seq4088 Length=12000580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || | ||| |||| | || |||||||| |||| || |||||| || || || Sbjct 9606399 AAACGAAGCACTGAATGCAAGGTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGG 9606458 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || |||||||| || | | | |||| ||||||| || || || ||||||||| Sbjct 9606459 CCATCCTCCAGCTGTTTCCCCGTGAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCC 9606518 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 ||||| |||| | |||| | | |||||| || ||| || |||| ||| Sbjct 9606519 TTGTCTTAGATTGTAGCTTTGACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTG 9606578 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || ||||| ||||| || || ||||| ||||| || Sbjct 9606579 ATAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGTAT 9606616 >seq3552 Length=199577 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || |||||||| ||||||||||| || |||||| ||| || Sbjct 80756 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTC 80815 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| | || | |||| ||||||| || || || |||||||||||||| Sbjct 80816 CAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 80875 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 |||||| |||| | || |||||| | ||| || || | ||| | || || Sbjct 80876 GATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 80935 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||| || || ||||| | |||||| Sbjct 80936 GCCCATCAGGGTCTTCACAAAGACCTGCAT 80965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475290063989200