Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8041 134 1e-26 seq459 131 2e-25 seq3552 113 5e-20 seq1683 107 2e-18 seq2669 105 7e-18 seq4088 91.5 1e-13 >seq8041 Length=9355897 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || ||||||||| | || || ||| ||| Sbjct 8398741 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8398682 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 8398681 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8398623 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 8398622 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8398563 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || ||||| ||||| ||||| || || || || Sbjct 8398562 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTAAGGGGAGG 8398515 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || ||||||||| | || || ||| ||| Sbjct 8398969 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8398910 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 8398909 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8398851 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 8398850 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8398791 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||| |||||| | ||||| ||| Sbjct 8398790 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8398742 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || ||||||||| | || || ||| ||| Sbjct 8399197 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399138 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 8399137 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8399079 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 8399078 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8399019 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||| |||||| | ||||| ||| Sbjct 8399018 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8398970 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || ||||||||| | || || ||| ||| Sbjct 8399425 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399366 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 8399365 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8399307 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 8399306 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8399247 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||| |||||| | ||||| ||| Sbjct 8399246 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8399198 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || ||||||||| | || || ||| ||| Sbjct 8399653 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399594 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 8399593 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8399535 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 8399534 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8399475 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||| |||||| | ||||| ||| Sbjct 8399474 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8399426 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | ||||| || ||||||||| | || || ||| ||| Sbjct 8399881 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399822 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 8399821 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8399763 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 8399762 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8399703 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||| |||||| | ||||| ||| Sbjct 8399702 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8399654 >seq459 Length=3563100 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | |||||||| ||||||||| | || || ||| || Sbjct 2213660 AAAATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 2213719 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || || ||||| || || | ||| Sbjct 2213720 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGAC 2213779 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | ||| ||||| |||||||| || | ||||| || || ||| Sbjct 2213780 CAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 2213839 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| ||||| |||| |||||| |||| || || Sbjct 2213840 AACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 2213889 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| | | | Sbjct 2213891 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 2213950 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || || | ||||| Sbjct 2213951 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 2214009 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| ||||| |||||||| || | ||||| || || ||||| Sbjct 2214010 GCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2214069 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||| |||| |||||| |||| || || Sbjct 2214070 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 2214117 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2214119 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2214178 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || ||||| || || | ||||| Sbjct 2214179 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2214238 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | ||| ||||| |||||||| || | ||||| || || |||||| Sbjct 2214239 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2214298 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| ||||| |||| || ||| |||| || ||| Sbjct 2214299 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 2214346 >seq3552 Length=199577 Score = 113 bits (124), Expect = 5e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| | || || || || || | |||||| ||||||||| | || || ||| ||| Sbjct 80965 ATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 80906 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 80905 GACACCACTGAGAATG-TCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 80847 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTACA 38421 |||| || |||| ||| ||||||||||||| || | ||||| | || | ||||||| Sbjct 80846 GCAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTC-CATCAGACTACA 80788 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || || || | || ||||| |||||||| | | || ||||||| Sbjct 80787 ATATTCAGAAAGAGTCCACCCTGCACTTGGTGCTTCATCTGCAAGGCGGC 80738 >seq1683 Length=8760594 Score = 107 bits (118), Expect = 2e-18 Identities = 167/230 (73%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| ||| || ||| ||| Sbjct 1156124 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGGCCATCACCCTCGG-GTTGAGCCCAGT 1156066 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | || || | | |||| |||| || ||||| ||||| || |||||| |||| Sbjct 1156065 GACACCACTGAGAATG-TCAAAGCTAAAACCCAAGACAAGGAGGGCAT-CCCGCCTGACC 1156008 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | |||| || |||| ||||||||||||||||| |||| | ||| || |||||| Sbjct 1156007 AGCAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGACGGGGACACTCTGTCACACTACA 1155948 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| |||| | | ||||| |||||||| || ||||||||||| Sbjct 1155947 GTATCC---AGGAGTCCGCCCTGCACTTGGTGCT-TGTCTGAGAGGCGGC 1155902 >seq2669 Length=6508339 Score = 105 bits (116), Expect = 7e-18 Identities = 165/233 (71%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| |||| || ||| ||| Sbjct 4561891 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4561950 Query 38304 GACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | |||| ||||||| ||||| ||||| || || | || || Sbjct 4561951 GACACCACTGAGAATG-TCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCA 4562009 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || |||| | |||||||||||| || || | |||| || |||||||| Sbjct 4562010 GCAGCATCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCTGTCAGACTACAA 4562069 Query 38423 CA---TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 | | || ||||| | || ||||| || |||| ||| || |||| |||| Sbjct 4562070 TATTCTTCAGAAGGAGTCCACCCTGCACTTAGTGCGTCGTCTGTGAGGTGGCC 4562122 >seq4088 Length=12000580 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 || || || || || || || || || ||||| || |||||| |||| || ||| |||| Sbjct 9606616 ATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACT 9606557 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| | |||| ||||| ||||| || || | ||||| Sbjct 9606556 GACACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACCAG 9606497 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||| || |||| | |||| ||||||||||| || | || || || || ||| | Sbjct 9606496 CAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACGAT 9606437 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | || || || | || |||||| ||||| |||||| |||||||| Sbjct 9606436 GTTCAGAAAGAGTCCACCTTGCATTCAGTGCTTCGTTTGGGAGGCGGC 9606389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499951129667200