Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5769 120 1e-21 seq4676 113 2e-19 seq4562 100 1e-15 >seq5769 Length=1171468 Score = 120 bits (132), Expect = 1e-21 Identities = 338/516 (66%), Gaps = 5/516 (1%) Strand=Plus/Plus Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 ||||| || | |||||| |||||| | |||||| | | | | ||||| | || ||| Sbjct 307266 AACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTGCAA 307325 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 ||| | ||| | | ||| | | ||| | ||| || ||| |||||| | | Sbjct 307326 TCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAATG 307385 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || || ||||| || | ||| |||| ||||| ||||| || |||||||| || Sbjct 307386 GTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCTATGGTACTG 307445 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAAT 451329 ||||| ||||| || || || || | | |||| | | | || || |||| || || Sbjct 307446 ACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCCACACTGTCACCAATGCTGTGAT 307504 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 || || || || ||||||||||| | || || || || || || |||||||| || Sbjct 307505 CACCGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCAGGTGTGAT 307564 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||| ||| | || || || ||||||| || ||||| ||||| ||||| | || ||||| Sbjct 307565 TGCAGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCTTATGG 307624 Query 451450 ACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509 ||| ||| | || | ||| | | | || | |||||| | |||||||| Sbjct 307625 CTTAGATAAAGC---AGGTCAGGGAGAGCGACACGTCCTAATCTTTGATCTGGGTGGAGG 307681 Query 451510 AACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAA 451569 || |||| || | || | || || || ||| | ||||| || ||||| || Sbjct 307682 CACATTTGATGTGTCCATCCTGACCATAGATGACGGGATTTTTGAGGTGAAGGCCACGGC 307741 Query 451570 TGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || || || || || || |||| || Sbjct 307742 TGGGGACACGCACCTGGGTGGGGAGGACTTTGACAA 307777 >seq4676 Length=6134593 Score = 113 bits (124), Expect = 2e-19 Identities = 237/353 (67%), Gaps = 3/353 (1%) Strand=Plus/Minus Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 || ||||| || || || || || |||| || ||| || || | ||||| ||||| Sbjct 4175133 CAGGTAAAATACAAGGGAGAGACAAAAAGCTTGTATCCAGAGGAGGTGTCATCCGTGGTT 4175074 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | || || ||| | ||||| |||||| || |||| | ||||| |||| | Sbjct 4175073 TTGACAAAGATGGAGGAAACTGCAGAAGCCTACCTTGGGAAGACTGTTACCAATGCTGAT 4175014 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || || ||| ||||||||||||| | || | || || || |||||||| ||| | Sbjct 4175013 GTCACAGTACCCACTTATTTCAATGACTCTCAGCATCAGGCTACCAAAGATGCTGGAACT 4174954 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||||||| | || || ||| |||| |||||||| || || || |||||| | || || Sbjct 4174953 ATTGCTGGTCTCAAAGTACTTAGAATCATTAATGAGCCAACTGCTGCTGCTATTGCTAAT 4174894 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| | ||| | || |||| |||| | | | ||||| || ||||| Sbjct 4174893 GGCTTAG---ACGAAAAGGTTGGAGCTGAAAGAAATGTGCTGATCTTTGACTTGGGTGGT 4174837 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 || ||| |||| || ||| | ||||| ||||| | ||||| || || Sbjct 4174836 GGCACTTTTGATGTGTCAACCCTTACTATTGAGGATGGAATCTTTGATGTCAA 4174784 >seq4562 Length=4329500 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || ||||||||||| ||||| ||||| || ||||| Sbjct 1616102 GTTACTCATGCAGTTGTTACTGTACCTGCTTATTTCAACGATGCCCAACGCCAGGCAACC 1616161 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 ||||| || ||| ||||||||| || |||||| | | || || ||||| || Sbjct 1616162 AAAGACGCTGGAACTATTGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 1616214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974820895959140