Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq4676 138 9e-27
seq5769 131 1e-24
seq5530 104 2e-16
seq3812 102 6e-16
seq7227 98.7 8e-15
>seq4676
Length=6134593
Score = 138 bits (152), Expect = 9e-27
Identities = 478/736 (65%), Gaps = 26/736 (4%)
Strand=Plus/Plus
Query 517648 ATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAG 517706
||| |||| ||| |||||||| || | ||||||| ||| | | | || ||||| |
Sbjct 4174363 ATTCAGTTCTTTCCCATTGAAGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGG 4174421
Query 517707 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 517766
||| ||||| || | ||||| ||||| | ||| || || || ||||||| ||||
Sbjct 4174422 TTGAGCCTCCCACCAGGACAATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAG 4174481
Query 517767 AAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATT 517826
| |||| || || || || || | | |||| ||| | | | |||||| |||
Sbjct 4174482 GAGCTTTCTCCACAGGGTCCAGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATC 4174541
Query 517827 TAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCG 517886
|| | |||| || | || | || |||||||| | | ||||||| |||||
Sbjct 4174542 GGGCACGGGTAATAGAGGTATAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATAC 4174601
Query 517887 TAGTTTGAGTC---GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 517943
| || || ||||| || ||||||| |||||||| ||||| || || | || |
Sbjct 4174602 TGACCTGGGTGCTGGAAGA-GAGAGTGCAC--TTAGCACGCTCACAAGCAGTGCAGAGGC 4174658
Query 517944 TTCGTAAGGC----TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCT 517999
|| | || || | || |||| || | || | |||| |||||| |||
Sbjct 4174659 GACGGACAGCCCTCTTGTTCTCGCTGATG----TCCTTCTTGTGCTTTCGCTTGAACTCT 4174714
Query 518000 TCAACACACCATGTTACAAGA--CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTC 518057
||| | | ||| | | | | || ||||| || || || || || | |||| ||
Sbjct 4174715 GCAATAAA--ATGGTTGACGGTTCTGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTC 4174772
Query 518058 CTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTT---ACATCAT 518114
| | |||| | | || | || | |||||| |||| || ||| ||| ||||||
Sbjct 4174773 CGGCAGTAGATTTGACATCAAAGATTCCATCCTCAATAGT---AAGGGTTGACACATCAA 4174829
Query 518115 GGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAA 518174
|| |||||||||| ||||| || || ||||| |||| | |||| || |
Sbjct 4174830 AAGTGCCACCACCCAAGTCAAAGATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTA 4174889
Query 518175 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 518234
|||| |||| ||||||||||||||| |||||||| ||||| | || || |||||||
Sbjct 4174890 AGCCATTAGCAATAGCAGCAGCAGTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAG 4174949
Query 518235 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 518294
|||| |||| |||||||| || || || || || || || ||||| | || || |
Sbjct 4174950 CAATAGTTCCAGCATCTTTGGTAGCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTG 4175009
Query 518295 TAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTAC 518354
| | | | |||| || || || |||| || || ||| |||| | ||| ||
Sbjct 4175010 TGACATCAGCATTGGTAACAGTCTTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTG 4175069
Query 518355 TTAAAATCATTGATGA 518370
| |||| || |||||
Sbjct 4175070 TCAAAACCACGGATGA 4175085
>seq5769
Length=1171468
Score = 131 bits (144), Expect = 1e-24
Identities = 366/554 (66%), Gaps = 6/554 (1%)
Strand=Plus/Minus
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 518165
|||||| || || ||||||| |||||| || || || | || | || || | || |
Sbjct 307693 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 307634
Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225
|| | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || |
Sbjct 307633 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 307576
Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285
| ||||| ||||| |||||||| || ||||| || | || || || || ||||| |
Sbjct 307575 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 307516
Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345
| || || || || || |||| || || | || | | |||| || || | |
Sbjct 307515 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 307456
Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTT 518404
|||| ||| | | | ||| || || |||| || ||| | | |||| | || |
Sbjct 307455 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGGTAGAAA-GCTTTTTTCTCCCCT 307397
Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464
| || || || | | || || || |||| || |||| ||| ||||| |
Sbjct 307396 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 307337
Query 518465 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 518524
|||||||||||||| || | |||||||| | || ||||| | ||||| ||||||
Sbjct 307336 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 307277
Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584
|| | ||| || |||||| || || | || | ||||| ||||| || || || |
Sbjct 307276 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 307217
Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644
|| || || || || | ||||| || || ||||| || || || || || || ||
Sbjct 307216 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 307157
Query 518645 ATTTCAACTTTACC 518658
|| || || || ||
Sbjct 307156 ATCTCCACCTTGCC 307143
>seq5530
Length=3471620
Score = 104 bits (114), Expect = 2e-16
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| |
Sbjct 518071 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 518130
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560
|| |||||||||| | ||||| ||||| || |||||||||||| | | |||||| |
Sbjct 518131 GTGGTTGGAAGAGACAAATATGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 518190
Query 635561 GATGCTAGTCCTAAA 635575
|| ||| || ||||
Sbjct 518191 GAAGCTTCTCATAAA 518205
>seq3812
Length=17673402
Score = 102 bits (112), Expect = 6e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057
|||| || ||||| ||||| ||||| ||||||||| | |||||| | || |||||||
Sbjct 1807357 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 1807298
Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117
|||| ||||| ||| | || ||| ||||| || || ||||||||||| || |||||||
Sbjct 1807297 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 1807238
Query 367118 G 367118
|
Sbjct 1807237 G 1807237
>seq7227
Length=2485068
Score = 98.7 bits (108), Expect = 8e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | |||
Sbjct 603030 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 602971
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| ||||||||||| |||| |||||||| || || || | || || || || || ||
Sbjct 602970 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 602911
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
|| || || || | || ||||
Sbjct 602910 GCGGGTACTGTGACCACAGCAT 602889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779063006111230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |