Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4676 138 9e-27 seq5769 131 1e-24 seq5530 104 2e-16 seq3812 102 6e-16 seq7227 98.7 8e-15 >seq4676 Length=6134593 Score = 138 bits (152), Expect = 9e-27 Identities = 478/736 (65%), Gaps = 26/736 (4%) Strand=Plus/Plus Query 517648 ATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAG 517706 ||| |||| ||| |||||||| || | ||||||| ||| | | | || ||||| | Sbjct 4174363 ATTCAGTTCTTTCCCATTGAAGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGG 4174421 Query 517707 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 517766 ||| ||||| || | ||||| ||||| | ||| || || || ||||||| |||| Sbjct 4174422 TTGAGCCTCCCACCAGGACAATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAG 4174481 Query 517767 AAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATT 517826 | |||| || || || || || | | |||| ||| | | | |||||| ||| Sbjct 4174482 GAGCTTTCTCCACAGGGTCCAGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATC 4174541 Query 517827 TAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCG 517886 || | |||| || | || | || |||||||| | | ||||||| ||||| Sbjct 4174542 GGGCACGGGTAATAGAGGTATAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATAC 4174601 Query 517887 TAGTTTGAGTC---GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 517943 | || || ||||| || ||||||| |||||||| ||||| || || | || | Sbjct 4174602 TGACCTGGGTGCTGGAAGA-GAGAGTGCAC--TTAGCACGCTCACAAGCAGTGCAGAGGC 4174658 Query 517944 TTCGTAAGGC----TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCT 517999 || | || || | || |||| || | || | |||| |||||| ||| Sbjct 4174659 GACGGACAGCCCTCTTGTTCTCGCTGATG----TCCTTCTTGTGCTTTCGCTTGAACTCT 4174714 Query 518000 TCAACACACCATGTTACAAGA--CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTC 518057 ||| | | ||| | | | | || ||||| || || || || || | |||| || Sbjct 4174715 GCAATAAA--ATGGTTGACGGTTCTGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTC 4174772 Query 518058 CTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTT---ACATCAT 518114 | | |||| | | || | || | |||||| |||| || ||| ||| |||||| Sbjct 4174773 CGGCAGTAGATTTGACATCAAAGATTCCATCCTCAATAGT---AAGGGTTGACACATCAA 4174829 Query 518115 GGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAA 518174 || |||||||||| ||||| || || ||||| |||| | |||| || | Sbjct 4174830 AAGTGCCACCACCCAAGTCAAAGATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTA 4174889 Query 518175 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 518234 |||| |||| ||||||||||||||| |||||||| ||||| | || || ||||||| Sbjct 4174890 AGCCATTAGCAATAGCAGCAGCAGTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAG 4174949 Query 518235 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 518294 |||| |||| |||||||| || || || || || || || ||||| | || || | Sbjct 4174950 CAATAGTTCCAGCATCTTTGGTAGCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTG 4175009 Query 518295 TAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTAC 518354 | | | | |||| || || || |||| || || ||| |||| | ||| || Sbjct 4175010 TGACATCAGCATTGGTAACAGTCTTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTG 4175069 Query 518355 TTAAAATCATTGATGA 518370 | |||| || ||||| Sbjct 4175070 TCAAAACCACGGATGA 4175085 >seq5769 Length=1171468 Score = 131 bits (144), Expect = 1e-24 Identities = 366/554 (66%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 518165 |||||| || || ||||||| |||||| || || || | || | || || | || | Sbjct 307693 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 307634 Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 || | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || | Sbjct 307633 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 307576 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | ||||| ||||| |||||||| || ||||| || | || || || || ||||| | Sbjct 307575 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 307516 Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345 | || || || || || |||| || || | || | | |||| || || | | Sbjct 307515 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 307456 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGAT-TCATTT 518404 |||| ||| | | | ||| || || |||| || ||| | | |||| | || | Sbjct 307455 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGGTAGAAA-GCTTTTTTCTCCCCT 307397 Query 518405 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTAT 518464 | || || || | | || || || |||| || |||| ||| ||||| | Sbjct 307396 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 307337 Query 518465 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 518524 |||||||||||||| || | |||||||| | || ||||| | ||||| |||||| Sbjct 307336 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 307277 Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 || | ||| || |||||| || || | || | ||||| ||||| || || || | Sbjct 307276 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 307217 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 || || || || || | ||||| || || ||||| || || || || || || || Sbjct 307216 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 307157 Query 518645 ATTTCAACTTTACC 518658 || || || || || Sbjct 307156 ATCTCCACCTTGCC 307143 >seq5530 Length=3471620 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 518071 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 518130 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||||||||| | ||||| ||||| || |||||||||||| | | |||||| | Sbjct 518131 GTGGTTGGAAGAGACAAATATGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 518190 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 518191 GAAGCTTCTCATAAA 518205 >seq3812 Length=17673402 Score = 102 bits (112), Expect = 6e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || ||||| ||||| ||||| ||||||||| | |||||| | || ||||||| Sbjct 1807357 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 1807298 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 1807297 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 1807238 Query 367118 G 367118 | Sbjct 1807237 G 1807237 >seq7227 Length=2485068 Score = 98.7 bits (108), Expect = 8e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 603030 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 602971 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 602970 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 602911 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 602910 GCGGGTACTGTGACCACAGCAT 602889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779063006111230