Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq459 143 6e-29 seq8041 141 2e-28 seq3552 109 1e-18 seq4088 96.9 8e-15 seq8358 93.3 9e-14 >seq459 Length=3563100 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 2214099 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2214040 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| ||||| |||||||| || || || Sbjct 2214039 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGG 2213980 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||| | ||||| || ||||| | ||||| Sbjct 2213979 ATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTCTTG 2213920 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 2213919 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2213891 Score = 140 bits (154), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || |||||||| | |||||| | |||||||| Sbjct 2213871 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2213812 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| ||||| ||||| || || || || Sbjct 2213811 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 2213752 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 2213751 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 2213695 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || ||||| | ||||||| Sbjct 2213694 TTGCCCGTCAAGGTCTTCACGAAGATCTGCATTT 2213661 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 2214327 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 2214268 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || | || ||||| ||||| ||||| || || || || Sbjct 2214267 AGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGG 2214208 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 2214207 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 2214151 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 2214150 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2214119 >seq8041 Length=9355897 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || ||||||||||| || || ||||| || | || || Sbjct 8398976 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 8399035 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 8399036 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 8399095 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 8399096 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 8399152 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 8399153 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399197 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || ||||||||||| || || ||||| || | || || Sbjct 8399204 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 8399263 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 8399264 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 8399323 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 8399324 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 8399380 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 8399381 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399425 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || ||||||||||| || || ||||| || | || || Sbjct 8399432 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 8399491 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 8399492 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 8399551 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 8399552 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 8399608 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 8399609 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399653 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || ||||||||||| || || ||||| || | || || Sbjct 8399660 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 8399719 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 8399720 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 8399779 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 8399780 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 8399836 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 8399837 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399881 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || |||||||| || || || ||||| || | || || Sbjct 8398748 TCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 8398807 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 8398808 GCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 8398867 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||||||||| |||||||| ||| ||||| || Sbjct 8398868 CTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTC 8398924 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 8398925 CAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8398969 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| || || || || ||||| || | || || | ||||||||| ||||| Sbjct 8398538 GTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 8398597 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| | | || |||||||| || ||||| || |||||||| || || Sbjct 8398598 TTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTT 8398657 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||||||||| |||||||| ||| ||||| || ||||| | ||||| || Sbjct 8398658 CGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTCTTACC 8398714 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || ||||| | ||||| Sbjct 8398715 CGTCAAGGTCTTCACGAAGATCTGCAT 8398741 >seq3552 Length=199577 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| ||||||||||| || | |||| | ||||| || ||||| Sbjct 80762 GTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCCAGCTG 80821 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || | || || || || | || ||||| || || ||||| || |||||||| ||||| Sbjct 80822 TTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 80881 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||| ||||||| ||| || || |||||||| | ||||| || Sbjct 80882 AGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 80938 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || || ||||| Sbjct 80939 CATCAGGGTCTTCACAAAGACCTGCAT 80965 >seq4088 Length=12000580 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||| |||| || |||||| | ||||| | ||||| || ||||| || || Sbjct 9606420 GTGGACTCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCC 9606479 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 | ||| || || | || ||||| || || ||||| || ||||||| ||| | ||| Sbjct 9606480 GTGAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTG 9606539 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||| | ||||||| | || || || ||||| | ||||| ||||||| || Sbjct 9606540 ACATTCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTC 9606599 Query 195124 TTTACGAA 195131 || || || Sbjct 9606600 TTCACAAA 9606607 >seq8358 Length=16791372 Score = 93.3 bits (102), Expect = 9e-14 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||| ||||| || ||||| | Sbjct 2262999 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC----AGAGTACGT 2262944 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 | ||||| | ||||| | || |||||| ||| ||| || | ||| |||| ||||| Sbjct 2262943 CTGTCTTCTGGTTGCTTCCTAGCAAAGATAGGTCTTTGCTGATTGGGAAGAATTCCTTCC 2262884 Query 195043 TTGTCTTGAATTTT 195056 || ||||| || || Sbjct 2262883 TTATCTTGGATGTT 2262870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108977598913985