Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq8041 134 9e-27 seq3552 105 4e-18 seq459 93.3 3e-14 seq2669 91.5 1e-13 seq1683 86.0 4e-12 seq1720 84.2 1e-11 seq4088 82.4 5e-11 >seq8041 Length=9355897 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| || | || |||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 8398515 CCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 8398574 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| || ||||| || | | ||||||||| | || Sbjct 8398575 AGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8398634 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| |||||| | || | |||| || ||| || Sbjct 8398635 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 8398694 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || ||||| | |||||||| ||||||||||| Sbjct 8398695 TCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8398741 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 8398989 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 8399048 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 8399049 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 8399108 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 8399109 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 8399168 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 8399169 CCCGTCAAGGTCTTCACGAAGATCTGCAT 8399197 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 8399217 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 8399276 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 8399277 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 8399336 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 8399337 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 8399396 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 8399397 CCCGTCAAGGTCTTCACGAAGATCTGCAT 8399425 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 8399445 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 8399504 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 8399505 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 8399564 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 8399565 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 8399624 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 8399625 CCCGTCAAGGTCTTCACGAAGATCTGCAT 8399653 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 8399673 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 8399732 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 8399733 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 8399792 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 8399793 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 8399852 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 8399853 CCCGTCAAGGTCTTCACGAAGATCTGCAT 8399881 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 8398761 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 8398820 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | ||||||||||| Sbjct 8398821 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 8398880 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 8398881 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 8398940 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 8398941 CCCGTCAAGGTCTTCACGAAGATCTGCAT 8398969 >seq3552 Length=199577 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||||| || ||||| || | | || |||| ||| Sbjct 80757 ACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCC 80816 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| | ||||| || || | |||||||| | || | ||||||||||| Sbjct 80817 AGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 80876 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || | | |||| || |||||| || | ||| ||||| | Sbjct 80877 ATTTTAGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCT 80934 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||| | || ||||||||||||| |||||| Sbjct 80935 TGCCCATCAGGGTCTTCACAAAGACCTGCAT 80965 >seq459 Length=3563100 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || ||||| | || |||| |||||||| || || || || Sbjct 2214309 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 2214250 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | |||||||| || ||||| || || || Sbjct 2214249 ATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCAC--AT 2214192 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || || ||||||| Sbjct 2214191 TCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 2214132 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 2214131 CGAAGATCTGCATA 2214118 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || || ||||| ||||| || || ||| Sbjct 2213889 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 2213830 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || || || || || | |||||||| | || Sbjct 2213829 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 2213770 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | |||||||| || ||||| || || || || || | |||| || ||| | Sbjct 2213769 ATGCCCTCCTTATCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 2213712 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| ||||| || ||||| | |||||||| ||||||||||| || Sbjct 2213711 CCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2213660 >seq2669 Length=6508339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 34798 GAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTC 34857 |||| || ||||| || || | | |||| || |||||||| || |||| || || Sbjct 4562074 GAATATTGTAGTCTGACAGAGTGCAGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGAT 4562015 Query 34858 GTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTA--T 34915 | ||||| || | || | ||||||||||| || || |||||| || || | Sbjct 4562014 GCTGCTGATCAGGTGGGATGCCCTCCTTGTCCTGGATTTTAGCTTTGAC--ATTCTCAGT 4561957 Query 34916 CGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGAT 34975 | |||| || |||||| |||| ||| ||||| || ||||| || |||||||||||||| Sbjct 4561956 GGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGAT 4561897 Query 34976 CTGCAT 34981 |||||| Sbjct 4561896 CTGCAT 4561891 >seq1683 Length=8760594 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/157 (73%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || ||||||||||| || ||||| || || | |||||||| |||| | ||||||||| Sbjct 1155971 TCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTG 1156030 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || | || |||||| || || | | |||| || |||||| ||| ||| | Sbjct 1156031 TCTTGGGTTTTAGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCAAC-CCGAGGGTGA 1156087 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || ||||| || |||||||||||||||||||| Sbjct 1156088 TGGCCTTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 1156124 >seq1720 Length=6396105 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 |||||||| || ||||| || || | || | ||||||||||||| || || || | Sbjct 3282196 TTCTGAATATTCTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAAACTC 3282255 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| | || || | |||| || || Sbjct 3282256 AGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTTGATTTTAGCTCTGAC--ATTCT 3282313 Query 34914 --ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | | |||| || |||||| |||| ||| | ||| || ||| | || ||||||||| Sbjct 3282314 CAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAGGGTCTTGCCCATCAGGCTCTTCACAA 3282373 Query 34972 AGATCTG 34978 ||| ||| Sbjct 3282374 AGACCTG 3282380 >seq4088 Length=12000580 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||| | || || || || | || |||| ||||||||||| || | || Sbjct 9606426 TCTTTCTGAACATCGTAATCTGACAGAGTACGGCCATCCTCCAGCTGTTTCCCCGTGAAA 9606485 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| || | |||||| || Sbjct 9606486 ATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTAGATTGTAGCTTTGAC--AT 9606543 Query 34911 GCT-ATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | | ||| || |||||| |||| ||| || || || || || || ||||||| Sbjct 9606544 TCTTATTGGTGTCAGTGGACTCAACCTCGAGGGTGATAGTCTTGCCTGTCAGGGTCTTCA 9606603 Query 34969 CAAAGATCTGCAT 34981 |||||||||| || Sbjct 9606604 CAAAGATCTGTAT 9606616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324493323285240