Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq6502 120 3e-22
seq35448 111 2e-19
seq4475 84.2 2e-11
>seq6502
Length=3845251
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||||||||| || || | |||||| |||||||| | || ||||||||||||| || |
Sbjct 1107975 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 1108034
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| |
Sbjct 1108035 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1108094
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 1108095 CTACAACACGTTCTCC 1108110
Score = 105 bits (116), Expect = 8e-18
Identities = 112/146 (77%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || ||| ||||||| | ||||||||||||| || || | ||| ||||||||
Sbjct 1106584 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATC 1106641
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 1106642 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 1106701
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 1106702 TCCATAAAGTCAAATGGATTTTCTAC 1106727
>seq35448
Length=3664250
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| ||| | || || ||||| || || ||||| || ||
Sbjct 107722 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 107781
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| ||||| ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 107782 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 107841
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 107842 TTTCTTATACCATA 107855
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/171 (73%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| |||| |||| || | |||||| || |
Sbjct 105334 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAATTAGGCTCAGCAATATGTATGT 105393
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || || ||||| ||||||||| |||| | ||
Sbjct 105394 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCAGCTGCC--ATCTTGAGTACGGT 105451
Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
|| || | || ||||| || || ||||||| ||| || | ||| || ||
Sbjct 105452 TTTCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 105502
>seq4475
Length=11054148
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || ||||
Sbjct 3059031 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCC 3059090
Query 18733 ATAAAATCAAATGGATTTT 18751
||||||||||| |||||||
Sbjct 3059091 ATAAAATCAAAGGGATTTT 3059109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561859680406200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |