Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq7227 116 3e-20
seq4676 105 5e-17
seq3619 105 5e-17
seq8503 86.0 5e-11
seq3392 86.0 5e-11
>seq7227
Length=2485068
Score = 116 bits (128), Expect = 3e-20
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | || ||||| || || || |||||||| || ||||| || ||
Sbjct 602882 GTTACCAATGCTGTGGTCACAGTACCCGCTTACTTCAATGACTCTCAGCGTCAGGCGACC 602941
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||||||| || ||||| ||| | || |||||||| || ||||||
Sbjct 602942 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT 603001
Query 550511 GCTGCACTTGCATATGG 550527
||||| |||| |||||
Sbjct 603002 GCTGCTATTGCTTATGG 603018
Score = 93.3 bits (102), Expect = 3e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527
|| || ||||| || | ||||| | ||| | | ||| ||||||||||| || |||
Sbjct 604318 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 604377
Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587
|| || || || |||||||| ||||||||||| ||||||||||| || | |||||| ||
Sbjct 604378 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 604437
Query 552588 GCTTGTGATAA 552598
||| |||||
Sbjct 604438 GCTGTGGATAA 604448
>seq4676
Length=6134593
Score = 105 bits (116), Expect = 5e-17
Identities = 331/507 (65%), Gaps = 7/507 (1%)
Strand=Plus/Minus
Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084
||||| ||||| | | | || ||||| || | ||||| |||||| || ||| |
Sbjct 4175395 TGTGTGGGTGTCTTCTAGCACGGGAAAGTAGAGGTACTTGCCGGTGATCAGGGAAACCCA 4175336
Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-ATTTA--GTTGGTGATGCAGCA 550141
|| | ||| | |||| ||||||| | | ||| ||| | ||| |||||| |||
Sbjct 4175335 ACCGCCCCAAGCTGTGTTGCTTTCACCCATATCGAATGATTGATCGTT--TGATGCTGCA 4175278
Query 550142 AAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201
|| | |||| | || || |||| || |||||||||| ||| | | ||||||
Sbjct 4175277 AAGAACCAAGTTGCGATGAACCCCACCAGCACCGTTTTTGATGCCAAATGCCTCATTGGA 4175218
Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261
|||| ||| || || | ||| || | |||| |||||||||| | ||| | ||
Sbjct 4175217 CGAAGATTTGATTATGCTGTTGTCCAATCTGATACGAAGCATTGGTCCTTCATGGTGGTG 4175158
Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321
|||| | || | ||| | | | | | | | ||| ||| || |
Sbjct 4175157 AATGACGCAGGCAGGCCTAAGGTCCAGGTAAAATACAAGGGAGAGACAAAAAGCTTGTAT 4175098
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
||||| | | ||||| ||||||| | || ||| | |||| || || | ||
Sbjct 4175097 CCAGAGGAGGTGTCATCCGTGGTTTTGACAAAGATGGAGGAAACTGCAGAAGCCTACCTT 4175038
Query 550382 GGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440
|| |||| ||||| |||| | | || ||||| | ||||| |||||||| || |
Sbjct 4175037 GGG-AAGACTGTTACCAATGCTGATGTCACAGTACCCACTTATTTCAATGACTCTCAGCA 4174979
Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500
||| ||||| |||||||||||| ||||||||| || || || ||| | || || |||||
Sbjct 4174978 TCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAAAGTACTTAGAATCATTAATGA 4174919
Query 550501 ACCTACTGCTGCTGCACTTGCATATGG 550527
|| ||||||||||| |||| ||||
Sbjct 4174918 GCCAACTGCTGCTGCTATTGCTAATGG 4174892
>seq3619
Length=6636636
Score = 105 bits (116), Expect = 5e-17
Identities = 284/423 (67%), Gaps = 25/423 (6%)
Strand=Plus/Minus
Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103
|||| ||||| || |||||||| ||| | ||||| ||| || | |||| ||||||
Sbjct 5705219 ATGGAAAAGTAGAGATTATTGCTAATTACCAAGGCAACTTTACCAGTCCAAGTTATGTAG 5705160
Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATC 550163
||||||| ||| |||||| | | ||| | | || | |||| | ||| | |
Sbjct 5705159 CTTTCAC--AAAGTGAACACCTGATCAATGAGGTTTCTAAGAACCAAGAGGC-GGTGAAC 5705103
Query 550164 CT-ACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222
|| |||||||| || ||||||||||| | | ||||| | | ||| ||||| | ||
Sbjct 5705102 CTCACCAATACCATCTTTGATGCTAAGAGGCTGATTGGTTGCAAGTTTGATGATGCCACA 5705043
Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT--- 550279
|||||| |||| |||||||| |||||||||||| | || || ||||| |||
Sbjct 5705042 GTTCAGTCAGA-ATGAAGCACTGGCCTTTCCAAGTGATTTGTGAAAAGGGAAAGCCTAAA 5704984
Query 550280 TATATTGAAGCTACTCATGAAGGATCTGTTAAACAA--TTTTCACCAGAACAAATTTCAT 550337
| ||| || | || |||| ||| || ||||| ||||| | | || |
Sbjct 5704983 GAAATT---GCAAAATATAAAGG-------AAATAATTTTTTCCCCAGAGGAGGTGTCTT 5704934
Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGC--CAGTGCTTTTGTTGGTCAAGAAGTTAC 550395
| |||||| ||| | | |||||| | | || ||| || || | || || ||| ||
Sbjct 5704933 CCATGGTTCTAA-GCAGATGAAAGAGATTGCTGAAGT-CTGTT-TAGGGAAAAAAGGTAG 5704877
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
||||| |||| ||||| ||| | || || ||||| ||||| |||| || || || ||
Sbjct 5704876 AAATGCAATAATTACTGTTCCAACCTACTTAAATGATTCACAGTGTCAGGCCACCAAGGA 5704817
Query 550456 TGC 550458
||
Sbjct 5704816 AGC 5704814
>seq8503
Length=28787257
Score = 86.0 bits (94), Expect = 5e-11
Identities = 82/103 (80%), Gaps = 3/103 (3%)
Strand=Plus/Minus
Query 552488 TGGTACTTTTAATTTAGAA-GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546
||||| |||| | |||| || |||||||| || ||||||||||| || || |||||||
Sbjct 27071588 TGGTA--TTTATTCTAGATTGGAATTCCTCCAGCCCCTCGTGGAGTCCCTCAGATTGAAG 27071531
Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
|||| || || || ||||||||||| ||| || |||| ||||
Sbjct 27071530 TTACATTTGACATTGATGCCAATGGGATTGTGCATGTTTCTGC 27071488
>seq3392
Length=10974801
Score = 86.0 bits (94), Expect = 5e-11
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
|||||||||||||| | ||| | | |||||| ||||| || || ||||| || |||||
Sbjct 3969949 AATATTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 3969890
Query 563352 TTGCTGATCAGGAGGAATTCCT 563373
|||||| |||||||||||||||
Sbjct 3969889 TTGCTGGTCAGGAGGAATTCCT 3969868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027420979697950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |