Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7227 116 3e-20 seq4676 105 5e-17 seq3619 105 5e-17 seq8503 86.0 5e-11 seq3392 86.0 5e-11 >seq7227 Length=2485068 Score = 116 bits (128), Expect = 3e-20 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| || || || |||||||| || ||||| || || Sbjct 602882 GTTACCAATGCTGTGGTCACAGTACCCGCTTACTTCAATGACTCTCAGCGTCAGGCGACC 602941 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||| | || |||||||| || |||||| Sbjct 602942 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT 603001 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 603002 GCTGCTATTGCTTATGG 603018 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || || ||||| || | ||||| | ||| | | ||| ||||||||||| || ||| Sbjct 604318 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 604377 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || || |||||||| ||||||||||| ||||||||||| || | |||||| || Sbjct 604378 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 604437 Query 552588 GCTTGTGATAA 552598 ||| ||||| Sbjct 604438 GCTGTGGATAA 604448 >seq4676 Length=6134593 Score = 105 bits (116), Expect = 5e-17 Identities = 331/507 (65%), Gaps = 7/507 (1%) Strand=Plus/Minus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||| ||||| | | | || ||||| || | ||||| |||||| || ||| | Sbjct 4175395 TGTGTGGGTGTCTTCTAGCACGGGAAAGTAGAGGTACTTGCCGGTGATCAGGGAAACCCA 4175336 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-ATTTA--GTTGGTGATGCAGCA 550141 || | ||| | |||| ||||||| | | ||| ||| | ||| |||||| ||| Sbjct 4175335 ACCGCCCCAAGCTGTGTTGCTTTCACCCATATCGAATGATTGATCGTT--TGATGCTGCA 4175278 Query 550142 AAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGA 550201 || | |||| | || || |||| || |||||||||| ||| | | |||||| Sbjct 4175277 AAGAACCAAGTTGCGATGAACCCCACCAGCACCGTTTTTGATGCCAAATGCCTCATTGGA 4175218 Query 550202 AGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 |||| ||| || || | ||| || | |||| |||||||||| | ||| | || Sbjct 4175217 CGAAGATTTGATTATGCTGTTGTCCAATCTGATACGAAGCATTGGTCCTTCATGGTGGTG 4175158 Query 550262 AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCA 550321 |||| | || | ||| | | | | | | | ||| ||| || | Sbjct 4175157 AATGACGCAGGCAGGCCTAAGGTCCAGGTAAAATACAAGGGAGAGACAAAAAGCTTGTAT 4175098 Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 ||||| | | ||||| ||||||| | || ||| | |||| || || | || Sbjct 4175097 CCAGAGGAGGTGTCATCCGTGGTTTTGACAAAGATGGAGGAAACTGCAGAAGCCTACCTT 4175038 Query 550382 GGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 || |||| ||||| |||| | | || ||||| | ||||| |||||||| || | Sbjct 4175037 GGG-AAGACTGTTACCAATGCTGATGTCACAGTACCCACTTATTTCAATGACTCTCAGCA 4174979 Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 ||| ||||| |||||||||||| ||||||||| || || || ||| | || || ||||| Sbjct 4174978 TCAGGCTACCAAAGATGCTGGAACTATTGCTGGTCTCAAAGTACTTAGAATCATTAATGA 4174919 Query 550501 ACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||||||||| |||| |||| Sbjct 4174918 GCCAACTGCTGCTGCTATTGCTAATGG 4174892 >seq3619 Length=6636636 Score = 105 bits (116), Expect = 5e-17 Identities = 284/423 (67%), Gaps = 25/423 (6%) Strand=Plus/Minus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| ||||| || |||||||| ||| | ||||| ||| || | |||| |||||| Sbjct 5705219 ATGGAAAAGTAGAGATTATTGCTAATTACCAAGGCAACTTTACCAGTCCAAGTTATGTAG 5705160 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATC 550163 ||||||| ||| |||||| | | ||| | | || | |||| | ||| | | Sbjct 5705159 CTTTCAC--AAAGTGAACACCTGATCAATGAGGTTTCTAAGAACCAAGAGGC-GGTGAAC 5705103 Query 550164 CT-ACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || |||||||| || ||||||||||| | | ||||| | | ||| ||||| | || Sbjct 5705102 CTCACCAATACCATCTTTGATGCTAAGAGGCTGATTGGTTGCAAGTTTGATGATGCCACA 5705043 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCT--- 550279 |||||| |||| |||||||| |||||||||||| | || || ||||| ||| Sbjct 5705042 GTTCAGTCAGA-ATGAAGCACTGGCCTTTCCAAGTGATTTGTGAAAAGGGAAAGCCTAAA 5704984 Query 550280 TATATTGAAGCTACTCATGAAGGATCTGTTAAACAA--TTTTCACCAGAACAAATTTCAT 550337 | ||| || | || |||| ||| || ||||| ||||| | | || | Sbjct 5704983 GAAATT---GCAAAATATAAAGG-------AAATAATTTTTTCCCCAGAGGAGGTGTCTT 5704934 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGC--CAGTGCTTTTGTTGGTCAAGAAGTTAC 550395 | |||||| ||| | | |||||| | | || ||| || || | || || ||| || Sbjct 5704933 CCATGGTTCTAA-GCAGATGAAAGAGATTGCTGAAGT-CTGTT-TAGGGAAAAAAGGTAG 5704877 Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||||| |||| ||||| ||| | || || ||||| ||||| |||| || || || || Sbjct 5704876 AAATGCAATAATTACTGTTCCAACCTACTTAAATGATTCACAGTGTCAGGCCACCAAGGA 5704817 Query 550456 TGC 550458 || Sbjct 5704816 AGC 5704814 >seq8503 Length=28787257 Score = 86.0 bits (94), Expect = 5e-11 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 552488 TGGTACTTTTAATTTAGAA-GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 ||||| |||| | |||| || |||||||| || ||||||||||| || || ||||||| Sbjct 27071588 TGGTA--TTTATTCTAGATTGGAATTCCTCCAGCCCCTCGTGGAGTCCCTCAGATTGAAG 27071531 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||| || || || ||||||||||| ||| || |||| |||| Sbjct 27071530 TTACATTTGACATTGATGCCAATGGGATTGTGCATGTTTCTGC 27071488 >seq3392 Length=10974801 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 |||||||||||||| | ||| | | |||||| ||||| || || ||||| || ||||| Sbjct 3969949 AATATTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 3969890 Query 563352 TTGCTGATCAGGAGGAATTCCT 563373 |||||| ||||||||||||||| Sbjct 3969889 TTGCTGGTCAGGAGGAATTCCT 3969868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027420979697950