Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq4303 98.7 1e-15 seq3939 95.1 2e-14 >seq4303 Length=2400573 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 2255 GATCTGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAA 2314 || ||| |||||||| ||||| || ||||| ||| |||| ||||| ||| | ||| Sbjct 1794355 GACCTGTGAGATCCACCTGACTTGCTCTGTGGAGAATCCAAATGATGTCATAT---TCAG 1794299 Query 2315 ATGGGAGGCCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCC 2374 ||| || || || || || ||||| | || | |||||||| | |||||||||||| Sbjct 1794298 GTGGCAGATCTCAGGAAAAACACTTCTGAGGGAAGCAAACCTCACTATCTCCTGGGACCC 1794239 Query 2375 CAGGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAAT 2429 || || |||||| ||| |||||| ||||| || || || |||| |||||| Sbjct 1794238 CAAAAATGACAGTGAAGAGACCTACACTTGCATAGCTGAGAATCCTGTCAGCAAT 1794184 >seq3939 Length=6707506 Score = 95.1 bits (104), Expect = 2e-14 Identities = 182/266 (68%), Gaps = 3/266 (1%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || ||||||||||| ||||| | || |||||||||| || |||||||| |||| Sbjct 751242 GTTTCACAAACCAGCTCAACCCCACAAATTGTGAATGGGGCTCTGGGGGAGTCAGTAATG 751301 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | ||| | || | ||| ||||| ||| |||| ||||| ||||||| Sbjct 751302 CTTCCCCTGAAGTTTTCTGCAGAGAAGAGGATCATGTCTATCATCTGGCTTCACAACGGA 751361 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 | || |||||||| | | | | ||| ||| || | | || | |||| || Sbjct 751362 ATATCTATCGCCTTCA--CACAGTTAGAAGGACAA-AGTTCACTGACATATATAACTGAT 751418 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || ||| | || ||| | | |||| | ||||||||| | ||| | |||||||| Sbjct 751419 CCAAAATGGAAAAATCGATTGAGTGTCACTGACTCCTACTCCTTGCAAATCAGCAACCTG 751478 Query 2118 GAGATGGAAGACACCGGGTCCTACAG 2143 |||| |||| | || || ||||| Sbjct 751479 ACAATGGCAGACGCAGGATCTTACAG 751504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629004309551800