Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 315 6e-81
seq5010 147 2e-30
seq2156 104 2e-17
seq2315 82.4 6e-11
>seq1473
Length=14027634
Score = 315 bits (348), Expect = 6e-81
Identities = 483/687 (70%), Gaps = 4/687 (1%)
Strand=Plus/Plus
Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825
|||||||| || || || | | ||||| | ||||| || || ||||| ||||||
Sbjct 9372563 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 9372621
Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885
| ||| || ||||||| ||||| |||| || || || | || || |||| ||| ||
Sbjct 9372622 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 9372681
Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945
|||||||| ||||| |||||||||||||||||||| ||||| || || || ||||||||
Sbjct 9372682 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 9372741
Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005
|| |||| || || ||||| || || ||||| |||| |||||| ||||| || |
Sbjct 9372742 TCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAG 9372801
Query 30006 GGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30065
|| ||||| || || || ||| |||| | || ||| || |||||||| |||| |||
Sbjct 9372802 GGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGAT 9372861
Query 30066 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30125
||| | ||||| | |||||| | |||| ||| | || ||||| || || ||
Sbjct 9372862 GATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTAC 9372921
Query 30126 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30185
|| | || || || |||| | | || ||| || || || ||||||||||||||
Sbjct 9372922 TCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTG 9372981
Query 30186 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30245
|| | ||| || || || || |||| |||| ||| ||| ||| |||||||
Sbjct 9372982 AAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCAA 9373038
Query 30246 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30305
| | ||| ||| || ||||||||||||| || || ||||| || ||||| || |
Sbjct 9373039 GACGCCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGC 9373098
Query 30306 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30365
||||||||| || ||| |||||||||| ||||||| || ||||||| || || |
Sbjct 9373099 GTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACG 9373158
Query 30366 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACAC 30425
||||| ||||| || ||||| | | |||||| ||| ||||| || |||||
Sbjct 9373159 TTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACAC 9373218
Query 30426 GGACAAGACTCCCGTGCCCGTCCTGTC 30452
|||| | || |||||||| | |||
Sbjct 9373219 CGACAGGGTGCCGGTGCCCGTGCGGTC 9373245
>seq5010
Length=10235142
Score = 147 bits (162), Expect = 2e-30
Identities = 131/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| ||||| || ||||||||||||||||| |||||
Sbjct 3047449 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 3047390
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| ||||||| |||||| ||||| || || ||||| |||| |
Sbjct 3047389 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 3047330
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | || |||||| || || || ||||||||
Sbjct 3047329 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 3047286
Score = 114 bits (126), Expect = 1e-20
Identities = 126/168 (75%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || || || ||||||||||| || || ||||| ||||| || || ||
Sbjct 3044219 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 3044160
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
||| ||||| ||| ||| ||| ||||||| ||||||| ||| || ||||||||
Sbjct 3044159 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 3044100
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| || || ||||| || ||||| || | ||||||||| ||
Sbjct 3044099 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 3044052
>seq2156
Length=6750109
Score = 104 bits (114), Expect = 2e-17
Identities = 166/236 (70%), Gaps = 8/236 (3%)
Strand=Plus/Minus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTC-TC 112138
||||||||| || || || || | || || ||||| |||| || || ||||| |
Sbjct 6386555 ATGAGCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTT 6386496
Query 112139 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 112198
| | ||||| |||||| || || ||||||||||| ||||||||||| || ||||||| |
Sbjct 6386495 TTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAAT 6386436
Query 112199 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 112258
|||| || ||| |||||||| | | ||||| | || | ||||| || || |
Sbjct 6386435 TCTGTTTACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCC 6386376
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 112313
||| || ||||| |||| || | ||| || ||||| |||||| |||||
Sbjct 6386375 TGAGT------GGGTGCCAGTGCAGGTCCCTGTTCTTGCCGATACCCATGTTCTGG 6386326
>seq2315
Length=13333760
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| || | || || ||||| | | ||||| |||||| || ||
Sbjct 1935678 TTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 1935619
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| |||||||||||||| ||||||| || || || |||
Sbjct 1935618 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGTTTACCT 1935571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408441033142715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |