Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq3956 91.5 4e-14 >seq3956 Length=2629880 Score = 91.5 bits (100), Expect = 4e-14 Identities = 188/276 (68%), Gaps = 18/276 (7%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| | || || ||| ||||||| | || || || || || || | | Sbjct 1808823 TTCCTTCTGGGTACTACGGGAGAGTAGCTCCACGTTCAGGCTTGGCTGCAAAACACTTCA 1808882 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| | ||| ||| | || || || ||||||||||| ||| Sbjct 1808883 TAGATGTAGGAGCTGGTGTCACAGATGAAGATTATACAGGAAATGTTGGTGTTGTACTAT 1808942 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || |||||| | ||||| ||| | | Sbjct 1808943 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCA 1808999 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATT 1188 |||||||| | | ||||||| ||| |||||| ||| ||| ||||| || Sbjct 1809000 TTTGTGAA----CAGATTTTCCACCCA--GAAATAGAGGAAGTTCAAGTGTTAGATGACA 1809053 Query 1189 CGGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 | |||||||| || | ||| ||||| || || |||| Sbjct 1809054 CTGAAAGGGGCTCAGGAGGTTTTGGTTCCACTGGAA 1809089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138623211145980