Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3956 172 1e-37 seq35440 123 5e-23 seq5108 93.3 8e-14 >seq3956 Length=2629880 Score = 172 bits (190), Expect = 1e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 1281337 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 1281396 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || ||||||| || ||||| || | |||||| |||||| Sbjct 1281397 TCCCGGAGGAGGCCGGCAGTGCTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 1281456 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| |||||||| || ||||| || ||| ||||| || ||||| |||| Sbjct 1281457 TTGTCCTCCAGGCGCGCGATACGCTCCAGCTTCCGCTTCCGGCACTTAGTGGCCGCCAGC 1281516 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || || | |||||||| |||||||| ||||||| ||| || Sbjct 1281517 CGGTTCCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 1281576 Query 241625 GAC 241627 ||| Sbjct 1281577 GAC 1281579 >seq35440 Length=12707973 Score = 123 bits (136), Expect = 5e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || || |||||||| || ||||| | | ||| || | ||| | | ||| | | Sbjct 1528523 AGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGCTCCGTGTTCTGGCTC 1528582 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| ||||||||| ||||| || |||| |||||| ||||| |||||| |||||| Sbjct 1528583 TTGAGCGTCTTCACTTTTTCCTCGAGGCGCGAGATGCGCTCCAGCTTGCGCTTGCGGCAC 1528642 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | |||||| || || | ||| || |||||||| ||||| ||||| Sbjct 1528643 TTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTAATGCGCTCCTGCGTG 1528702 Query 241610 TCCATGTCGATCGGAGAC 241627 ||||||||||| || ||| Sbjct 1528703 TCCATGTCGATAGGCGAC 1528720 >seq5108 Length=3340571 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 3166919 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 3166978 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 3166979 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 3167038 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 3167039 ATGGGGGAC 3167047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931119956307200