Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq5769 122 6e-22
seq7227 114 8e-20
seq4676 104 2e-16
seq3812 89.7 3e-12
>seq5769
Length=1171468
Score = 122 bits (134), Expect = 6e-22
Identities = 326/493 (66%), Gaps = 4/493 (1%)
Strand=Plus/Plus
Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442
|| || || || || || ||||| ||||| || || | || || || ||||| |
Sbjct 307143 GGCAAGGTGGAGATCATCGCCAACGACCAGGGGAACCGCACCACCCCCAGCTATGTGGCC 307202
Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502
|| || || || || | || || || ||||| || || | || | || |||||
Sbjct 307203 TTCACGGACACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCATGAATCCA 307262
Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562
|| ||| | |||||||| ||| | ||||||| | || ||| ||||| | ||
Sbjct 307263 CAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTG 307322
Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622
||||| |||||| | |||||||||| | || || |||| || || || || | ||
Sbjct 307323 CAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTA 307382
Query 474623 GAAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681
| | | | || ||| || | ||| || | || || |||| ||||| |||||
Sbjct 307383 -ATGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCTATGGT 307441
Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740
| | || ||||| | || || ||| | | | | || || || || |||| |
Sbjct 307442 ACTGACTAAGATGAAGGAGACTGCTGAGG-CTTTTTTGGGCCACACTGTCACCAATGCTG 307500
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| || || || ||||| ||||| ||||| ||||| || || || || || ||||| ||
Sbjct 307501 TGATCACCGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCAGGTG 307560
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
||||||||||| || || || | ||||| || ||||| ||||| || || ||||||
Sbjct 307561 TGATTGCAGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCTT 307620
Query 474861 ATGGTCTTGATAA 474873
|||| | |||||
Sbjct 307621 ATGGCTTAGATAA 307633
>seq7227
Length=2485068
Score = 114 bits (126), Expect = 8e-20
Identities = 223/327 (68%), Gaps = 2/327 (1%)
Strand=Plus/Plus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||||||||| ||||||||||| |||| ||||| || || | | | |||| ||
Sbjct 603342 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGTATTGAGATT 603401
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
||||| || | ||||||||| || | | |||| |||||| | || |||||||||
Sbjct 603402 GATTCCCTCTATGAAGGAATCGACTTTTATACCTCTATTACCCGTGCCCGATTTGAAGAA 603461
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| || || | || | || || || || ||| ||| | ||| |
Sbjct 603462 TTAAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCTCTTCGGGATGCG 603521
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
||||| ||||||||||| ||||||| || || | || ||||| ||||| | || ||
Sbjct 603522 AAACTGGACAAATCACAGATCCATGACATCGTCTTGGTGGGAGGCTCAACTCGTATACCC 603581
Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794
|| || ||||| | || | | || ||||| ||| | | ||| | || | ||
Sbjct 603582 AAGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAATAAGAGCATCAA 603640
Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821
|||||||| |||||||| ||||| ||
Sbjct 603641 CCCTGATGAGGCTGTTGCTTATGGTGC 603667
Score = 102 bits (112), Expect = 5e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| ||||| | ||| | || ||| ||||||||||| ||| |
Sbjct 604318 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 604377
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| |||||||| ||||| ||||||||||| ||||| || |||||||| ||
Sbjct 604378 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 604437
Query 476171 GCTTGTGATAA 476181
||| |||||
Sbjct 604438 GCTGTGGATAA 604448
>seq4676
Length=6134593
Score = 104 bits (114), Expect = 2e-16
Identities = 127/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| |||||| | || | || ||| ||||||||||| ||| |
Sbjct 4174108 ACCAAGGATAACAACCTACTTGGCAAGGTTGAACTCACAGGCATTCCTCCTGCCCCCTGT 4174049
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| |||||||| ||||||||||||||||| ||||| || ||| |||| ||
Sbjct 4174048 GGCGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGAATCCTTGATGTGTCT 4173989
Query 476171 GCTTGTGATAA-ATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAA 476220
||| ||||| | | | ||||| || || || || || ||||||||
Sbjct 4173988 GCTGTGGATAAGAGCACAGAGAAAGAG-AACAAGATTACCATCACAAACAA 4173939
>seq3812
Length=17673402
Score = 89.7 bits (98), Expect = 3e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828
|||||||| || |||||||| || || || ||||| ||| || | ||||| ||||||
Sbjct 1807237 CCATCACGGCCAGCTCTACCAATCTCCTGGTAATATGATTCCATTTCCTTAGGAGCGCCA 1807296
Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887
||||| || ||| | ||||| | ||||||||| ||||||||||| || || || ||
Sbjct 1807297 TAATGAATGACTTTGCGAACATCAGCTTTATTAATGCCCATTCCAAAAGCTATGGTAGC 1807355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266658363022340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |