Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5769 122 6e-22 seq7227 114 8e-20 seq4676 104 2e-16 seq3812 89.7 3e-12 >seq5769 Length=1171468 Score = 122 bits (134), Expect = 6e-22 Identities = 326/493 (66%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442 || || || || || || ||||| ||||| || || | || || || ||||| | Sbjct 307143 GGCAAGGTGGAGATCATCGCCAACGACCAGGGGAACCGCACCACCCCCAGCTATGTGGCC 307202 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 || || || || || | || || || ||||| || || | || | || ||||| Sbjct 307203 TTCACGGACACCGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCATGAATCCA 307262 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 || ||| | |||||||| ||| | ||||||| | || ||| ||||| | || Sbjct 307263 CAGAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTAGTG 307322 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 ||||| |||||| | |||||||||| | || || |||| || || || || | || Sbjct 307323 CAATCAGATATGAAACTTTGGCCTTTTCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTA 307382 Query 474623 GAAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 | | | | || ||| || | ||| || | || || |||| ||||| ||||| Sbjct 307383 -ATGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATCTCTTCTATGGT 307441 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | || ||||| | || || ||| | | | | || || || || |||| | Sbjct 307442 ACTGACTAAGATGAAGGAGACTGCTGAGG-CTTTTTTGGGCCACACTGTCACCAATGCTG 307500 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| ||||| ||||| ||||| || || || || || ||||| || Sbjct 307501 TGATCACCGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCAGGTG 307560 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||||||||| || || || | ||||| || ||||| ||||| || || |||||| Sbjct 307561 TGATTGCAGGTCTCAACGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCTT 307620 Query 474861 ATGGTCTTGATAA 474873 |||| | ||||| Sbjct 307621 ATGGCTTAGATAA 307633 >seq7227 Length=2485068 Score = 114 bits (126), Expect = 8e-20 Identities = 223/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| |||| ||||| || || | | | |||| || Sbjct 603342 ACTGCTTGTGAGCGTGCTAAGCGCACTCTCTCTTCCAGCACCCAGGCCAGTATTGAGATT 603401 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | | |||| |||||| | || ||||||||| Sbjct 603402 GATTCCCTCTATGAAGGAATCGACTTTTATACCTCTATTACCCGTGCCCGATTTGAAGAA 603461 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| ||| | ||| | Sbjct 603462 TTAAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCTCTTCGGGATGCG 603521 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||||||||| ||||||| || || | || ||||| ||||| | || || Sbjct 603522 AAACTGGACAAATCACAGATCCATGACATCGTCTTGGTGGGAGGCTCAACTCGTATACCC 603581 Query 475736 AAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | || | | || ||||| ||| | | ||| | || | || Sbjct 603582 AAGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGGAAAGAACTGAATAAGAGCATCAA 603640 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||| |||||||| ||||| || Sbjct 603641 CCCTGATGAGGCTGTTGCTTATGGTGC 603667 Score = 102 bits (112), Expect = 5e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| ||||||||||| ||| | Sbjct 604318 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATTCCTCCTGCCCCCCGT 604377 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||| ||||||||||| ||||| || |||||||| || Sbjct 604378 GGCGTTCCTCAGATTGAAGTCACTTTCGATATTGATGCCAATGGCATCCTTAATGTGTCT 604437 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 604438 GCTGTGGATAA 604448 >seq4676 Length=6134593 Score = 104 bits (114), Expect = 2e-16 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| |||||| | || | || ||| ||||||||||| ||| | Sbjct 4174108 ACCAAGGATAACAACCTACTTGGCAAGGTTGAACTCACAGGCATTCCTCCTGCCCCCTGT 4174049 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| || ||| |||| || Sbjct 4174048 GGCGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGAATCCTTGATGTGTCT 4173989 Query 476171 GCTTGTGATAA-ATCTAGTAACAAGAGTAAAAATATAACTATTACAAACAA 476220 ||| ||||| | | | ||||| || || || || || |||||||| Sbjct 4173988 GCTGTGGATAAGAGCACAGAGAAAGAG-AACAAGATTACCATCACAAACAA 4173939 >seq3812 Length=17673402 Score = 89.7 bits (98), Expect = 3e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || |||||||| || || || ||||| ||| || | ||||| |||||| Sbjct 1807237 CCATCACGGCCAGCTCTACCAATCTCCTGGTAATATGATTCCATTTCCTTAGGAGCGCCA 1807296 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887 ||||| || ||| | ||||| | ||||||||| ||||||||||| || || || || Sbjct 1807297 TAATGAATGACTTTGCGAACATCAGCTTTATTAATGCCCATTCCAAAAGCTATGGTAGC 1807355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266658363022340