Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4676 134 1e-25 seq5769 131 1e-24 seq5530 109 4e-18 seq7227 98.7 7e-15 seq3812 96.9 3e-14 >seq4676 Length=6134593 Score = 134 bits (148), Expect = 1e-25 Identities = 485/749 (65%), Gaps = 26/749 (3%) Strand=Plus/Plus Query 281815 ATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAG 281873 ||| |||| ||| |||||||| || | ||||||| ||| | | | || ||||| | Sbjct 4174363 ATTCAGTTCTTTCCCATTGAAGAAGTCCTGCAGAAGTT-TCTGAATCCTGGGGATACGGG 4174421 Query 281874 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 281933 ||| ||||| || | ||||| ||||| | ||| || || || ||||||| |||| Sbjct 4174422 TTGAGCCTCCCACCAGGACAATGTCATGGATCTGAGACTTGTCTAGTTTTGCATCCCGAG 4174481 Query 281934 AAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATT 281993 | |||| || || || || || | | |||| ||| | | | |||||| ||| Sbjct 4174482 GAGCTTTCTCCACAGGGTCCAGGGTGCCACAGAACAGGTCAGCATTTAATTCTTCAAATC 4174541 Query 281994 TAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCG 282053 || | |||| || | || | || |||||||| | | ||||||| ||||| Sbjct 4174542 GGGCACGGGTAATAGAGGTATAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATAC 4174601 Query 282054 TAGTTTGAGTC---GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 282110 | || || ||||| || ||||||| |||||||| ||||| || || | || | Sbjct 4174602 TGACCTGGGTGCTGGAAGA-GAGAGTGCAC--TTAGCACGCTCACAAGCAGTGCAGAGGC 4174658 Query 282111 TTCGTAAGGC----TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCT 282166 || | || || | || |||| || | || | |||| |||||| ||| Sbjct 4174659 GACGGACAGCCCTCTTGTTCTCGCTGATG----TCCTTCTTGTGCTTTCGCTTGAACTCT 4174714 Query 282167 TCAACACACCATGTTACAAGA--CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTC 282224 ||| | | ||| | | | | || ||||| || || || || || | |||| || Sbjct 4174715 GCAATAAA--ATGGTTGACGGTTCTGTTGTCAAAGTCCTCTCCACCAAAGTGGGTATCTC 4174772 Query 282225 CTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTA---ACATCAT 282281 | | |||| | | || | || | |||||| |||| || ||| || |||||| Sbjct 4174773 CGGCAGTAGATTTGACATCAAAGATTCCATCCTCAATAGT---AAGGGTTGACACATCAA 4174829 Query 282282 GGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAA 282341 || |||||||||| ||||| || || ||||| |||| | |||| || | Sbjct 4174830 AAGTGCCACCACCCAAGTCAAAGATCAGCACATTTCTTTCAGCTCCAACCTTTTCGTCTA 4174889 Query 282342 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 282401 |||| |||| ||||||||||||||| |||||||| ||||| | || || ||||||| Sbjct 4174890 AGCCATTAGCAATAGCAGCAGCAGTTGGCTCATTAATGATTCTAAGTACTTTGAGACCAG 4174949 Query 282402 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 282461 |||| |||| |||||||| || || || || || || || ||||| | || || | Sbjct 4174950 CAATAGTTCCAGCATCTTTGGTAGCCTGATGCTGAGAGTCATTGAAATAAGTGGGTACTG 4175009 Query 282462 TAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTAC 282521 | | | | |||| || || || |||| || || ||| |||| | ||| || Sbjct 4175010 TGACATCAGCATTGGTAACAGTCTTCCCAAGGTAGGCTTCTGCAGTTTCCTCCATCTTTG 4175069 Query 282522 TTAAAATCATTGATGAAATTTGTTCTGGA 282550 | |||| || ||||| | | |||||| Sbjct 4175070 TCAAAACCACGGATGACACCTCCTCTGGA 4175098 >seq5769 Length=1171468 Score = 131 bits (144), Expect = 1e-24 Identities = 366/554 (66%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGT 282332 |||||| || || ||||||| |||||| || || || | || | || || | || | Sbjct 307693 ACATCAAATGTGCCTCCACCCAGATCAAAGATTAGGACGTGTCGCTCTCCCTGACCTGCT 307634 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 || | | ||| ||||| |||| |||||||| || ||||| || |||||||| | || | Sbjct 307633 TTATCT-AAG-CCATAAGCAATGGCAGCAGCTGTGGGTTCGTTGATAATTCTTAGCACGT 307576 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | ||||| ||||| |||||||| || ||||| || | || || || || ||||| | Sbjct 307575 TGAGACCTGCAATCACACCTGCATCCTTGGTGGCCTGGCGCTGAGAGTCATTGAAATAGG 307516 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512 | || || || || || |||| || || | || | | |||| || || | | Sbjct 307515 CTGGCACGGTGATCACAGCATTGGTGACAGTGTGGCCCAAAAAAGCCTCAGCAGTCTCCT 307456 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCATTT 282571 |||| ||| | | | ||| || || |||| || || | | | |||| | || | Sbjct 307455 TCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGG-GTAGAAAGCTTTTTTCTCCCCT 307397 Query 282572 TGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATAT 282631 | || || || | | || || || |||| || |||| ||| |||||| | Sbjct 307396 TTGTAGGACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGAAAAGGCCAAAGT 307337 Query 282632 TTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691 |||||||||||||| || | |||||||| | || ||||| | ||||| |||||| Sbjct 307336 TTCATATCTGATTGCACTACAGGATCATTAAATTTCCTGCCAATCAGACGTTTGGCATCA 307277 Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 || | ||| || |||||| | || | || | ||||| ||||| || || || | Sbjct 307276 AAGACAGTGTTCTGTGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGC 307217 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 || || || || || | ||||| || || ||||| || || || || || || || Sbjct 307216 TCGGTGTCCGTGAAGGCCACATAGCTGGGGGTGGTGCGGTTCCCCTGGTCGTTGGCGATG 307157 Query 282812 ATTTCAACTTTACC 282825 || || || || || Sbjct 307156 ATCTCCACCTTGCC 307143 >seq5530 Length=3471620 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 518071 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 518130 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||||||||| | ||||| ||||| || |||||||||||| | | |||||| | Sbjct 518131 GTGGTTGGAAGAGACAAATATGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 518190 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 518191 GAAGCTTCTCATAAA 518205 >seq7227 Length=2485068 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 603030 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 602971 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 602970 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTCGCCTGACGCTGAGAGTCATTGAAGTAA 602911 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 602910 GCGGGTACTGTGACCACAGCAT 602889 >seq3812 Length=17673402 Score = 96.9 bits (106), Expect = 3e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | |||||| | || ||||||| Sbjct 1807357 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATGTTCGCAAAGTCATTCATT 1807298 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| ||||| || || ||||||||||| || ||||||| Sbjct 1807297 ATGGCGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCGTGATG 1807238 Query 131301 G 131301 | Sbjct 1807237 G 1807237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738889709332830