Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq8041 188 6e-43 >seq8041 Length=9355897 Score = 188 bits (208), Expect = 6e-43 Identities = 481/720 (67%), Gaps = 73/720 (10%) Strand=Plus/Plus Query 1070 CCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGC 1129 |||||||| || |||||||||||||||| ||||||| ||| || | | | ||||||| Sbjct 6506329 CCCACAGCCCTGGCTTCTGGTCTGAAAA-GAGTAGGCATCTTCTGGGTGCCATGGAAGGC 6506387 Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 |||||||||||| ||||| ||| |||||||| | || |||||||||| | |||| ||| Sbjct 6506388 ATTTTAAAGAAATGGCTTGGAAGAAAAATCTCGAGGTCACTTACATAGTTATCCAAAAGC 6506447 Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTG----TAT-GTCCCGTGGTA 1244 | |||||||| || || || ||||| || ||| ||| || ||| || Sbjct 6506448 TCCTTAAATGAGATCTTTAACTCCTCGATTATGCCTCGTTGGTCATATGGTTCCGGCGT- 6506506 Query 1245 GTGGATGG---CCGT--GGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGC 1299 || | ||| |||| || |||| || |||| ||| ||||||||| |||||||||||| Sbjct 6506507 GTAGGTGGGCACCGTGCGGCAGGACAGGAAGGGTCCCAAACAGCAGAACAGGAACAGGGC 6506566 Query 1300 AAGCCCTGAAGATTTTGTAAAAATAGAGTAATGC-------CCACACACCCCCACCTGCC 1352 ||| | | |||| || | | | ||| | |||| ||| || |||||||||||| Sbjct 6506567 AAGTCTGGCAGATCCTGGAGAGAGAGAATGATGCTATGAAGCCAGACGCCCCCACCTGCC 6506626 Query 1353 CCATACCTTAACCTGCCCAAGCTTTCACCACCGAAGCTGTGCC------GGACTGAGCCC 1406 || | ||| || |||| | | | |||| ||| || |||| ||| Sbjct 6506627 CC--AGCTTGCGTCGCTTAAGC---CGCTGTTG-GGCTGAGCCACCTCTGGGCTGACCCC 6506680 Query 1407 CATC-CAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTG 1465 | | ||||| |||| ||| | || || || | | ||| ||| | || ||| | Sbjct 6506681 CTGCGTGGTCTTCCTCTCCATCTGGAGACACCAGA-CTCTCCCCCCA-AACCAGCGGCAG 6506738 Query 1466 TAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTG 1525 ||| | | || |||||| | |||| || || || |||||||| ||| || |||| | Sbjct 6506739 CAGGCCGCAGCGGTACCTGTGTGGGAGACCATGGCGGGAGAGAGAGAG---GCTGCTTCG 6506795 Query 1526 GCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGC 1585 || |||||| || ||| ||||||| || || | | |||| ||||||||||||| Sbjct 6506796 GCGACAGCTTCTGGAGCCCAATGTGCTGGCCATGGTCCTCGGGA--GGTATATAAAGGGC 6506853 Query 1586 TAGTTGTAAGG-AGGAGCAC--TAAAAGTACCGCCCACGGTAAAGTCATTACT------- 1635 ||| | |||| || || || | | || ||||||| | | | |||||||| Sbjct 6506854 CAGTCGCAAGGAAGAAGGACCATCGATGTCCCGCCCATAGCAGAATCATTACTCAGCTTT 6506913 Query 1636 ----CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAG 1690 ||||||||| ||||||| || ||||| | ||||||| ||| Sbjct 6506914 TCTCCAGAAAACACTTTCAAAATTCTGCCACC----------------CAAGGCTGAAAG 6506957 Query 1691 GAAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG 1747 |||| ||| |||||||| ||| ||||| || |||| || | || | ||||| || Sbjct 6506958 GAAACGCTGAGGTTACCCTGAAGGTGGGCCACCGCCTGACTCAGTCCAGACGCACACAGG 6507017 Score = 143 bits (158), Expect = 2e-29 Identities = 244/347 (70%), Gaps = 19/347 (5%) Strand=Plus/Plus Query 417 TTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACttttttttGATAGCTG 476 |||||||| ||||||||| | ||||| | | ||||| ||| |||| | | Sbjct 6504850 TTCAGGCAGTTTGAAAACTGATTTAAAATAGTCAAGATGAATCTTTTCTTTTCAAATTGA 6504909 Query 477 TCTGTAGGCATAGAAATGTCTG------GTGCGCGTTGCAATTCAAGTTTTTTGAGATGG 530 |||||||||| |||||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 6504910 TCTGTAGGCACAGAAATGTTTGTTTTTGGTGCACGTTGAAATTCGAGTTTGTCGAGATGT 6504969 Query 531 TCCATGACATCAGTAAAACTATTTGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAA 590 || ||||| || || | | ||| || ||| | | || || ||| ||||| |||||| Sbjct 6504970 TCTATGACCACATCAAGAGT--TTG-GTTATTGAGTATTGGTTGGATCGCTCTGAAATAA 6505026 Query 591 GGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGG-CTGGGGGCTCA-CAGAAAAGCACT 648 |||||||||||||| |||| || || |||||| || |||||| ||| ||| || ||| Sbjct 6505027 GGCAGGATGGCTGAGCTGTCGAGGTAGTGTGGGGGTCTGGGG--TCAGCAGTGAAACACG 6505084 Query 649 GCATGCGGCACGTGCATGATTTTACTAATCCCTTATTCTCTTTCTGCTTCTGTGG---AA 705 |||| | || || ||| || | ||| ||||| | |||| ||| || || Sbjct 6505085 GCATCTCGTACTGGCTGGATATTGGCACTCC---TTTCTCGTCCTGCAGCTGGGGAACAA 6505141 Query 706 GGAGAGGAAATGGGTGAGCATTAGTGTTGTAAAGCAGTCAGAAACCC 752 |||| ||||||||| ||| | ||| ||| || ||| |||||| || Sbjct 6505142 GGAGTCGAAATGGGTAAGCGTCAGTTTTGCGAAACAGCCAGAAATCC 6505188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438365635690000