Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq8041 188 6e-43
>seq8041
Length=9355897
Score = 188 bits (208), Expect = 6e-43
Identities = 481/720 (67%), Gaps = 73/720 (10%)
Strand=Plus/Plus
Query 1070 CCCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGGAAGGC 1129
|||||||| || |||||||||||||||| ||||||| ||| || | | | |||||||
Sbjct 6506329 CCCACAGCCCTGGCTTCTGGTCTGAAAA-GAGTAGGCATCTTCTGGGTGCCATGGAAGGC 6506387
Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189
|||||||||||| ||||| ||| |||||||| | || |||||||||| | |||| |||
Sbjct 6506388 ATTTTAAAGAAATGGCTTGGAAGAAAAATCTCGAGGTCACTTACATAGTTATCCAAAAGC 6506447
Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTG----TAT-GTCCCGTGGTA 1244
| |||||||| || || || ||||| || ||| ||| || ||| ||
Sbjct 6506448 TCCTTAAATGAGATCTTTAACTCCTCGATTATGCCTCGTTGGTCATATGGTTCCGGCGT- 6506506
Query 1245 GTGGATGG---CCGT--GGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACAGGGC 1299
|| | ||| |||| || |||| || |||| ||| ||||||||| ||||||||||||
Sbjct 6506507 GTAGGTGGGCACCGTGCGGCAGGACAGGAAGGGTCCCAAACAGCAGAACAGGAACAGGGC 6506566
Query 1300 AAGCCCTGAAGATTTTGTAAAAATAGAGTAATGC-------CCACACACCCCCACCTGCC 1352
||| | | |||| || | | | ||| | |||| ||| || ||||||||||||
Sbjct 6506567 AAGTCTGGCAGATCCTGGAGAGAGAGAATGATGCTATGAAGCCAGACGCCCCCACCTGCC 6506626
Query 1353 CCATACCTTAACCTGCCCAAGCTTTCACCACCGAAGCTGTGCC------GGACTGAGCCC 1406
|| | ||| || |||| | | | |||| ||| || |||| |||
Sbjct 6506627 CC--AGCTTGCGTCGCTTAAGC---CGCTGTTG-GGCTGAGCCACCTCTGGGCTGACCCC 6506680
Query 1407 CATC-CAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGGCTG 1465
| | ||||| |||| ||| | || || || | | ||| ||| | || ||| |
Sbjct 6506681 CTGCGTGGTCTTCCTCTCCATCTGGAGACACCAGA-CTCTCCCCCCA-AACCAGCGGCAG 6506738
Query 1466 TAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCTTTG 1525
||| | | || |||||| | |||| || || || |||||||| ||| || |||| |
Sbjct 6506739 CAGGCCGCAGCGGTACCTGTGTGGGAGACCATGGCGGGAGAGAGAGAG---GCTGCTTCG 6506795
Query 1526 GCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAGGGC 1585
|| |||||| || ||| ||||||| || || | | |||| |||||||||||||
Sbjct 6506796 GCGACAGCTTCTGGAGCCCAATGTGCTGGCCATGGTCCTCGGGA--GGTATATAAAGGGC 6506853
Query 1586 TAGTTGTAAGG-AGGAGCAC--TAAAAGTACCGCCCACGGTAAAGTCATTACT------- 1635
||| | |||| || || || | | || ||||||| | | | ||||||||
Sbjct 6506854 CAGTCGCAAGGAAGAAGGACCATCGATGTCCCGCCCATAGCAGAATCATTACTCAGCTTT 6506913
Query 1636 ----CAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGAAG 1690
||||||||| ||||||| || ||||| | ||||||| |||
Sbjct 6506914 TCTCCAGAAAACACTTTCAAAATTCTGCCACC----------------CAAGGCTGAAAG 6506957
Query 1691 GAAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACACCGG 1747
|||| ||| |||||||| ||| ||||| || |||| || | || | ||||| ||
Sbjct 6506958 GAAACGCTGAGGTTACCCTGAAGGTGGGCCACCGCCTGACTCAGTCCAGACGCACACAGG 6507017
Score = 143 bits (158), Expect = 2e-29
Identities = 244/347 (70%), Gaps = 19/347 (5%)
Strand=Plus/Plus
Query 417 TTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACttttttttGATAGCTG 476
|||||||| ||||||||| | ||||| | | ||||| ||| |||| | |
Sbjct 6504850 TTCAGGCAGTTTGAAAACTGATTTAAAATAGTCAAGATGAATCTTTTCTTTTCAAATTGA 6504909
Query 477 TCTGTAGGCATAGAAATGTCTG------GTGCGCGTTGCAATTCAAGTTTTTTGAGATGG 530
|||||||||| |||||||| || |||| ||||| ||||| ||||| | ||||||
Sbjct 6504910 TCTGTAGGCACAGAAATGTTTGTTTTTGGTGCACGTTGAAATTCGAGTTTGTCGAGATGT 6504969
Query 531 TCCATGACATCAGTAAAACTATTTGTGTCATTAAAAAATGATTTGATGGCTCTAAAATAA 590
|| ||||| || || | | ||| || ||| | | || || ||| ||||| ||||||
Sbjct 6504970 TCTATGACCACATCAAGAGT--TTG-GTTATTGAGTATTGGTTGGATCGCTCTGAAATAA 6505026
Query 591 GGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGG-CTGGGGGCTCA-CAGAAAAGCACT 648
|||||||||||||| |||| || || |||||| || |||||| ||| ||| || |||
Sbjct 6505027 GGCAGGATGGCTGAGCTGTCGAGGTAGTGTGGGGGTCTGGGG--TCAGCAGTGAAACACG 6505084
Query 649 GCATGCGGCACGTGCATGATTTTACTAATCCCTTATTCTCTTTCTGCTTCTGTGG---AA 705
|||| | || || ||| || | ||| ||||| | |||| ||| || ||
Sbjct 6505085 GCATCTCGTACTGGCTGGATATTGGCACTCC---TTTCTCGTCCTGCAGCTGGGGAACAA 6505141
Query 706 GGAGAGGAAATGGGTGAGCATTAGTGTTGTAAAGCAGTCAGAAACCC 752
|||| ||||||||| ||| | ||| ||| || ||| |||||| ||
Sbjct 6505142 GGAGTCGAAATGGGTAAGCGTCAGTTTTGCGAAACAGCCAGAAATCC 6505188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438365635690000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |