Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8041 159 7e-34 seq459 152 1e-31 seq2669 120 6e-22 seq35445 98.7 2e-15 seq4088 98.7 2e-15 seq8358 86.0 1e-11 >seq8041 Length=9355897 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| || || ||||| || ||||||||||| ||||| ||||| || || || ||||| Sbjct 8398514 ACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 8398573 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || ||||| ||||||||||| | || || || ||||| || Sbjct 8398574 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 8398633 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| ||||| ||||| || || || || || || || ||| | || || || Sbjct 8398634 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 8398693 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 8398694 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8398741 >seq459 Length=3563100 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| |||||| || | |||||| || || || ||||| || || ||||||| Sbjct 2214119 TACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 2214060 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || || ||||| || || || || || |||| Sbjct 2214059 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAG 2214000 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || || || || || || || |||| || | Sbjct 2213999 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCA 2213940 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 2213939 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2213891 >seq2669 Length=6508339 Score = 120 bits (132), Expect = 6e-22 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCT---GTATATTATAATCA 82640 || |||| || ||| | ||||||||||| || || || |||| | ||||| || || Sbjct 4562120 CCACCTCACAGACGACGCACTAAGTGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCT 4562061 Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || ||| | | || || ||||| ||||| || |||| || || || ||||| || Sbjct 4562060 GACAGAGTGCAGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGATGCTGCTGATCAGGT 4562001 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || || || ||||| || || || || ||||| ||||| ||| | || ||| | || || Sbjct 4562000 GGGATGCCCTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCA 4561941 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 4561940 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4561891 >seq35445 Length=8324874 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||||||||| ||| |||||||||| |||||||| ||||||||| | || |||| Sbjct 3843825 AAGCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATG 3843766 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | || | || | ||| || | || | |||||| | |||||||| || || || || | Sbjct 3843765 GGTTGACTGCCTTTGGCCCGTGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGACCA 3843706 Query 60429 TAATGCA 60435 | |||| Sbjct 3843705 TGTTGCA 3843699 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||| || || || || || || || ||||||||||| || ||| Sbjct 3845014 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 3844955 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | |||||||||||||| | ||| |||||||| || Sbjct 3844954 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 3844895 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| | || || || || Sbjct 3844894 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 3844860 >seq4088 Length=12000580 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| |||||| || ||| | |||| || || |||||||| | || ||||| || Sbjct 9606390 CCGCCTCCCAAACGAAGCACTGAATGCAAGGTGGACTCTTTCTGAACATCGTAATCTGAC 9606449 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || ||||| || | || || || || || || || || Sbjct 9606450 AGAGTACGGCCATCCTCCAGCTGTTTCCCCGTGAAAATCAGATGCTGCTGGTCAGGTGGG 9606509 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| |||| || | ||||| ||||| | | | || ||| | | || || Sbjct 9606510 ATGCCCTCCTTGTCTTAGATTGTAGCTTTGACATTCTTATTGGTGTCAGTGGACTCAACC 9606569 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| ||||| ||||| ||||| || Sbjct 9606570 TCGAGGGTGATAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGTAT 9606616 >seq8358 Length=16791372 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || || ||||| | ||| ||||||| |||| Sbjct 2262984 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAGT-ACGTCT---GTCTTCTGGTTGC 2262929 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || | ||||||||| ||||||| |||| ||| | ||||||||||||||||| || || Sbjct 2262928 TTCCTAGCAAAGATAGGTCTTTGCTGATTGGGAAGAATTCCTTCCTTATCTTGGATGTTG 2262869 Query 82728 GCTTTTACATTTT 82740 || ||| |||||| Sbjct 2262868 GCCTTTGCATTTT 2262856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981381188119245