Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq8041 159 7e-34
seq459 152 1e-31
seq2669 120 6e-22
seq35445 98.7 2e-15
seq4088 98.7 2e-15
seq8358 86.0 1e-11
>seq8041
Length=9355897
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| || || ||||| || ||||||||||| ||||| ||||| || || || |||||
Sbjct 8398514 ACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 8398573
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || ||||| ||||||||||| | || || || ||||| ||
Sbjct 8398574 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 8398633
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| || ||||| ||||| ||||| || || || || || || || ||| | || || ||
Sbjct 8398634 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCAC 8398693
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || ||||| || ||||| ||||| || || ||||||||
Sbjct 8398694 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8398741
>seq459
Length=3563100
Score = 152 bits (168), Expect = 1e-31
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || |||| |||||| || | |||||| || || || ||||| || || |||||||
Sbjct 2214119 TACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 2214060
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || ||||| || || || || || ||||| || || || || || ||||
Sbjct 2214059 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAG 2214000
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||||||||| || ||||| || || || || || || || || |||| || |
Sbjct 2213999 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCA 2213940
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||| || || |||||||| |||| ||||| || || ||||||||
Sbjct 2213939 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2213891
>seq2669
Length=6508339
Score = 120 bits (132), Expect = 6e-22
Identities = 165/230 (72%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCT---GTATATTATAATCA 82640
|| |||| || ||| | ||||||||||| || || || |||| | ||||| || ||
Sbjct 4562120 CCACCTCACAGACGACGCACTAAGTGCAGGGTGGACTCCTTCTGAAGAATATTGTAGTCT 4562061
Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700
|| ||| | | || || ||||| ||||| || |||| || || || ||||| ||
Sbjct 4562060 GACAGAGTGCAGCCATCCTCTAGCTGTTTGCCCACAAAAATCAGATGCTGCTGATCAGGT 4562001
Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760
|| || || ||||| || || || || ||||| ||||| ||| | || ||| | || ||
Sbjct 4562000 GGGATGCCCTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCA 4561941
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | || || |||||||| |||| ||||| ||||| ||||||||
Sbjct 4561940 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4561891
>seq35445
Length=8324874
Score = 98.7 bits (108), Expect = 2e-15
Identities = 98/127 (77%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368
|||||||||||||||| ||| |||||||||| |||||||| ||||||||| | || ||||
Sbjct 3843825 AAGCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATG 3843766
Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428
| || | || | ||| || | || | |||||| | |||||||| || || || || |
Sbjct 3843765 GGTTGACTGCCTTTGGCCCGTGGATTCAGAAGTATCTTTGGTGGAAACGATACCTGACCA 3843706
Query 60429 TAATGCA 60435
| ||||
Sbjct 3843705 TGTTGCA 3843699
Score = 95.1 bits (104), Expect = 2e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| |||||||| || || || || || || || ||||||||||| || |||
Sbjct 3845014 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 3844955
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| || || || || ||| | |||||||||||||| | ||| |||||||| ||
Sbjct 3844954 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 3844895
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
| ||| | || ||||| ||| | || || || ||
Sbjct 3844894 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 3844860
>seq4088
Length=12000580
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| |||||| || ||| | |||| || || |||||||| | || ||||| ||
Sbjct 9606390 CCGCCTCCCAAACGAAGCACTGAATGCAAGGTGGACTCTTTCTGAACATCGTAATCTGAC 9606449
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || || || || ||||| || | || || || || || || || ||
Sbjct 9606450 AGAGTACGGCCATCCTCCAGCTGTTTCCCCGTGAAAATCAGATGCTGCTGGTCAGGTGGG 9606509
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| |||| || | ||||| ||||| | | | || ||| | | || ||
Sbjct 9606510 ATGCCCTCCTTGTCTTAGATTGTAGCTTTGACATTCTTATTGGTGTCAGTGGACTCAACC 9606569
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || ||||||||||||| ||||| ||||| ||||| ||
Sbjct 9606570 TCGAGGGTGATAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGTAT 9606616
>seq8358
Length=16791372
Score = 86.0 bits (94), Expect = 1e-11
Identities = 100/133 (75%), Gaps = 4/133 (3%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || || ||||| | ||| ||||||| ||||
Sbjct 2262984 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAGT-ACGTCT---GTCTTCTGGTTGC 2262929
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| | ||||||||| ||||||| |||| ||| | ||||||||||||||||| || ||
Sbjct 2262928 TTCCTAGCAAAGATAGGTCTTTGCTGATTGGGAAGAATTCCTTCCTTATCTTGGATGTTG 2262869
Query 82728 GCTTTTACATTTT 82740
|| ||| ||||||
Sbjct 2262868 GCCTTTGCATTTT 2262856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981381188119245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |