Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq3785 295 8e-75 seq8309 197 2e-45 seq7851 82.4 9e-11 >seq3785 Length=24937548 Score = 295 bits (326), Expect = 8e-75 Identities = 675/1005 (67%), Gaps = 17/1005 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| |||||| | |||||||| || || | |||| || Sbjct 6510979 CCAGGGCTTTATGCCGCAGATGCTCGTCCAAACACTGGATGGCAAAGAAGTCTATGTCTG 6510920 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||||||| ||| || | || |||| || | || || | Sbjct 6510919 TGTCAAACTTATTGGCAAACAGGTGGTGCACGTGCAGCA---TCCAGTTCAAGTCACCGG 6510863 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || || || || |||||||| | ||||||||||||||| || |||| || | Sbjct 6510862 CTCCGAAAACACATACAGAGCGCACGTGGATGCCGCTGCACGGCGGGTAGGGGGCGCCCT 6510803 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||||||||| ||||| | |||| |||||||| | Sbjct 6510802 TGGAAACGTCACCTTCAAAGTACTGCCACTTAACAAACCTGGCAATAGAGTGCATGTCTG 6510743 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||||||||| | ||| | || || | || || || | |||| ||||| | | Sbjct 6510742 ACATGTCGTACTTAGA-ACTTAAGGACAGTGAGCCTGGGACTTCAGGCATCCTCTGAATA 6510684 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | |||||||| || || || || || | ||||||||| |||| | | Sbjct 6510683 GTGGCCCAGAGATACTCGTCTGGGCTGTATGTATCTTTTGCCCACTCCATAAACTTCTGG 6510624 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | || | || || || ||| | || | ||| || ||||| Sbjct 6510623 ATTTTTTCATTCTCAAGCACATAGCCCACATACTTCCTACTGACCACAAAATAGGCGCTG 6510564 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| || | | |||||| | |||||| ||| |||| | | Sbjct 6510563 CCTGAAAACAGCGGCGTTTCAAGAGGAGGATGTATTTTGTCAGTCCCCATGTTTGTCAGC 6510504 Query 162538 ATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 |||| | || ||||| ||| | ||| ||||||| | | ||| || | | Sbjct 6510503 TTTCCAT-TA--ACCAC-TGTATAGTGCTTTTTCCACCTTTCTTTTTTATGGGCGGGCAT 6510448 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | ||||| ||||| |||| ||| || | ||| |||| | || || || || Sbjct 6510447 TTTCTCGGTTTCTAGGTTGTTCTCGCCCATTAACGACTTGAGCTTCCTGACAATTTCCAG 6510388 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | || Sbjct 6510387 GTTGGTTTTAATCGGAAAATCCATACCGCAGAGATTGATCAAGTACTTCCAGTCCGCACT 6510328 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | | ||| || ||||| | ||||| | || ||||| || || |||||||| || || Sbjct 6510327 CATTTTGTAGAGGTCCTGCATGCAGTTGATGTCAGCCTGAACCCGGCTCCACGAGGCATA 6510268 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| || ||||||| |||| ||||| || || |||||| || | || || || Sbjct 6510267 CACCACACTCTCCAGTTGCCTGGCCACAAAAACGTTACTGAAACAAGACGCAATGCCAAT 6510208 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||| | ||| | || || || | ||| | || ||||| | |||||| | |||| Sbjct 6510207 CACTG-CAGCCAAAAAGGAT-TCCTCGGATTTTTTGTCCACGTGAATGCAGTAGAAATTC 6510150 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || |||| ||| || || || || || ||||| Sbjct 6510149 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCGAGCATTTCGATTTTGTGATGAACCACT 6510090 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 |||||||| ||||| || ||||| ||||| || ||| || | || || ||| ||| Sbjct 6510089 ATAGAATATGCTATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATGTATTTG 6510030 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 || | | | | || || ||||| || |||||||| |||||| Sbjct 6510029 CGCTTCTTGATGAAAGCAGCACAATCACTGGTCATGTTGACGTAG 6509985 >seq8309 Length=14478951 Score = 197 bits (218), Expect = 2e-45 Identities = 237/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || || || ||||| ||||| || | | Sbjct 4495228 CAGAGAGGGTGAGGCAGGCTACTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGC 4495169 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || || ||||||| |||||| ||||| || || | || || || ||| Sbjct 4495168 ACTTGTAACACCCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 4495109 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| ||||| || ||||| | | |||||| || | ||||||||| ||||| || || | Sbjct 4495108 GTCCCAGTTGGGTGATGTTTATCTTGTCCTTATAGGCAGGCTGGACTACAACCCCATGGT 4495049 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 4495048 TCTCGCTGAAGGTGATCATGTTTTCCGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 4494989 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||||| | |||| |||||||| |||||||| ||||||||||||| | Sbjct 4494988 TCAAGACTTCTTGGGGATTTTGCAGAGAGCAGCTTAAAGAGGCAGGTGTGTTCAGCGGCT 4494929 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 4494928 CTCTTACATCCTGGGTCACCAC 4494907 Score = 114 bits (126), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || |||| ||| || || |||||||||| || | || | ||| |||||||||| Sbjct 4497826 ACCGTTTCCCTGTAGTTGGTCACAGTCCCCAGGTACAGCACCTGGCAGATCACCTCCT-- 4497769 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || || ||||| || || || ||||| || |||||||| ||||| Sbjct 4497768 -TCCCCACCTGACTCTTGGGGTCTTTGACCTGGAGGATGCTGGTGACAGATGTTGTCCCA 4497710 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | ||| |||| | | |||||| || || || || || || | || ||||| Sbjct 4497709 TTGGGGTGTGAGAGAA---TCTCAGTACTGTTCTCAATCCCCGACCCAGAGACCTTCCAG 4497653 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| ||||| | |||| | ||||||||||| || |||| Sbjct 4497652 GAGATCACAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 4497607 >seq7851 Length=9529907 Score = 82.4 bits (90), Expect = 9e-11 Identities = 222/335 (66%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || |||||| || | | |||||| Sbjct 3085708 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTCCCGCAGGTGTTCAGTAAGTATTTC 3085767 Query 162703 CACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACT 162761 ||| || | | |||| | || || | | ||||||||| || ||||| || | Sbjct 3085768 CACGGCAC-CGGGCTCCGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACCCTGGA 3085826 Query 162762 CCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGA 162821 ||| || || || || || | |||| || |||| | |||||||| ||| || || Sbjct 3085827 CCAGGAGGCATAAACCACCCGAACCAATTTACTGGCCATGAAGACATTCGGGAAGCATGA 3085886 Query 162822 AACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTACG 162879 || || || | || ||| | ||| | | || | ||| |||||| || || Sbjct 3085887 AATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCTACATGGACA 3085944 Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939 ||||||| ||||||||||| || | || | ||| | || || || | || | ||| Sbjct 3085945 CAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCTTTCAAAGTTTTCAACCTTC 3086004 Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || ||||| || || Sbjct 3086005 TCATGGACCACCATAGAGTAAGCGATGGGAAAGTC 3086039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578175646168000