Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq8041 102 5e-17 >seq8041 Length=9355897 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| |||||| || |||||||| || || Sbjct 8398971 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 8399030 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 8399031 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8399090 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 8399091 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 8399149 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 8399150 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399197 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| |||||| || |||||||| || || Sbjct 8399199 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 8399258 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 8399259 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8399318 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 8399319 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 8399377 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 8399378 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399425 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| |||||| || |||||||| || || Sbjct 8399427 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 8399486 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 8399487 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8399546 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 8399547 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 8399605 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 8399606 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399653 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| |||||| || |||||||| || || Sbjct 8399655 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 8399714 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 8399715 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8399774 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 8399775 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 8399833 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 8399834 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399881 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||| || || ||| ||| || || |||||||| || || Sbjct 8398743 CCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 8398802 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 8398803 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8398862 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| || | | | || | |||||| || | ||||| Sbjct 8398863 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 8398921 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 8398922 CTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8398969 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || || || || | ||||| || |||||| || || || |||||||| || | Sbjct 8398513 CACCTCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 8398572 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| || ||||| ||||| | |||||| ||| | | Sbjct 8398573 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGG 8398632 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || ||| || | | | || | |||||| || | ||| Sbjct 8398633 GGATGCCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 8398691 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||| || || || || || ||||||||||| Sbjct 8398692 ACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8398741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328561964433600