Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1473 329 4e-85 seq8309 293 3e-74 seq5010 185 1e-41 seq6177 172 6e-38 seq1720 127 2e-24 seq7234 105 8e-18 seq5524 86.0 7e-12 >seq1473 Length=14027634 Score = 329 bits (364), Expect = 4e-85 Identities = 501/705 (71%), Gaps = 9/705 (1%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || |||||||| ||||| || | || | | | ||||| |||||||| ||||| | Sbjct 9372551 ATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTG 9372610 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || || ||||| | ||| || || |||| ||||| |||| ||| || ||||| ||||| Sbjct 9372611 TGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCT 9372670 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || | ||| || | ||||||||||||||| ||||||||||| ||||||||||| || ||| Sbjct 9372671 GTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCC 9372730 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 ||||||||||| || |||| || ||||||||||| || ||||| |||| ||||||| Sbjct 9372731 AGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAG 9372790 Query 147112 AACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGGCAGGTCCGCGGGGTTCCA 147170 |||||||| ||| ||||| || || || ||| || ||||| |||| || ||||| Sbjct 9372791 AACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTGAGCGGG-AGGTGTTTTGGATTCCA 9372849 Query 147171 GGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCT 147230 ||| | | | | | ||| | ||||| | || || || | ||| | Sbjct 9372850 GGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTG 9372909 Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTG-TCCCGCAGTCCACGTACCTGGCCCCAA 147289 ||| ||||| || || | ||| || | || ||| | || |||| |||||||| Sbjct 9372910 CAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTA-TCTTCGTATTCGGCCCCAA 9372968 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 | ||||||||||| |||| ||| ||||| || || || || | |||| ||||| | Sbjct 9372969 AATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATCTCC---TTCTCTGGTGGAGAATC 9373025 Query 147350 CC-GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCG 147408 || | | | ||| | | ||||||| |||||||||||| ||||||||||| Sbjct 9373026 CCAGGCTGTCCAAGACGC-CTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAA 9373084 Query 147409 GAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCC 147468 || |||||||||| || ||||| ||| ||| ||||| |||| ||||||||||| ||| Sbjct 9373085 GACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCC 9373144 Query 147469 CTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCC 147528 |||| || || | ||||| || ||||| || || | || || || || | |||| Sbjct 9373145 TTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCC 9373204 Query 147529 TGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 || || ||||| ||||| ||||| |||||||| | ||| ||| Sbjct 9373205 TGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCGTCC 9373249 >seq8309 Length=14478951 Score = 293 bits (324), Expect = 3e-74 Identities = 257/320 (80%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | || ||||||||| || ||||| | | ||||| ||| Sbjct 4494907 GTGGTGACCCAGGATGTAAGAGAGCCGCTGAACACACCTGCCTCTTTAAGCTGCTCTCTG 4494966 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | || || || ||||||| || ||||| ||||||||| | | || || Sbjct 4494967 CAAAATCCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCGGAA 4495026 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || || ||| | |||| ||||| || |||||||| || |||||||||||| Sbjct 4495027 AACATGATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAG 4495086 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||||||| || |||||| ||||||||||| || || |||||||||||||| Sbjct 4495087 ATAAACATCACCCAACTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 4495146 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| ||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 4495147 GAGGATGAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGA 4495206 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || ||||||||||||||||| Sbjct 4495207 GTAGCCTGCCTCACCCTCTC 4495226 Score = 212 bits (234), Expect = 7e-50 Identities = 216/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || || || || || ||||| | ||| |||||||| || |||| Sbjct 4497556 TCCCAGTACAGCCCACAGTTTTCCTTCACTACAAATTCTCTGAAGACCACCTAAATATCA 4497615 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||| ||||| | ||| ||| | |||||| | || ||||| | | Sbjct 4497616 CTTGCTCTGCCAATGCTCGCCCAGCCCCTGTGATCTCCTGGAAGGTCTCTGGGTCGGGGA 4497675 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| ||||||| ||| |||| || || | ||||| || || ||||| ||||| | | Sbjct 4497676 TTGAGAACAGTACTGAGATTCTCTCACACCCCAATGGGACAACATCTGTCACCAGCATCC 4497735 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| |||||||| ||| | ||| Sbjct 4497736 TCCAGGTCAAAGACCCCAAGAGTCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGTACC 4497795 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| || |||| |||||||| || | ||| |||| Sbjct 4497796 TGGGGACTGTGACCAACTACAGGGAAACGGTGAACAAAGGTA 4497837 >seq5010 Length=10235142 Score = 185 bits (204), Expect = 1e-41 Identities = 145/172 (84%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| ||||||||||| |||||||| Sbjct 3047453 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 3047394 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||||||||||| || ||||| |||| Sbjct 3047393 GGGCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTT 3047334 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGG 147152 ||||||| |||||||| ||| |||||| ||||| || |||||| ||||| Sbjct 3047333 CACCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGG 3047282 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341 ||||||||| |||||||| || |||||||| || || || || || || | |||| Sbjct 3044204 GGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCTCTGGT 3044145 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | | || || ||||||| | |||||||||||| |||||| Sbjct 3044144 GGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTCACTCC 3044085 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 ||||| || |||||||||| || ||||| ||| ||| || Sbjct 3044084 CTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTGGAGGA 3044044 >seq6177 Length=1774859 Score = 172 bits (190), Expect = 6e-38 Identities = 137/167 (82%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 656564 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 656623 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| ||||||||||| |||| Sbjct 656624 TGCCACAGGCGGAGAACCAC------------GGCCCTGACATCAAGGAGCATGTGAACT 656671 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| ||| |||||||||| || ||| Sbjct 656672 CCCTGGGGGAGAAGCTGAAGACCCTCAGACTGAGGCTGCGTCGCTGT 656718 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| ||||| || |||||||| ||||||||||| || || ||||| ||||||| Sbjct 658825 AGCTCCAAGAGAAGGGGGTCTACAAAGCCATGAGTGAGTTCGACATCTTTATCAACTACA 658884 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| |||||||||| || |||| Sbjct 658885 TAGAAGCCTACATGACAATGAAGATGA 658911 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||| Sbjct 656264 CAAATGAAGGACCAGCTGGACAACATGCTGTTGACCAGGTCCCTGCTGGAGGACTTTAAG 656323 Query 178233 G 178233 | Sbjct 656324 G 656324 >seq1720 Length=6396105 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| ||| | |||| || |||||||| ||| ||| ||||||| ||||| Sbjct 6382682 GTACTCCCTGGTATTTGTCATTGGCCTGATTGGCAACATCCTAGTGGTCCTAGTTCTCAT 6382623 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 6382622 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 6382563 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||| | | | ||||| || ||||| |||||| ||| Sbjct 6382562 CCTGATCTTCCTCTTCACACTGCCCTTCTGGATTGACT 6382525 >seq7234 Length=282933 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||| | |||| || | ||||| | ||||| | | |||| | Sbjct 32713 GTACTCCTTGGTGTTCGGGGTTGGCCTGCTGGGCAACGTGGTGGTGCTGATGATCCTTAC 32772 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| |||||||||||||||| |||| ||||||||||| || ||| Sbjct 32773 AAAATACAAGAGGCTCCACATCATGACCAACATCTACCTGCTCAACCTGGCCGTTTCTGA 32832 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||| || || || |||||||||| Sbjct 32833 CCTGCTTGTCCTGCTCACGCTGCCGTTCTGGATTCACT 32870 >seq5524 Length=12672740 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||| ||| ||||||| || |||| ||| | ||||| | || || || | Sbjct 3858975 TACTCCTTGGTCTTTCTGTTTGGCCTGCTTGGAAATTCTGTGGTGGTTCTGGTTCTGTTC 3859034 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 ||||||||| |||||| | ||||||| || | | |||| ||||||||||| | ||| Sbjct 3859035 AAGTACAAGCGGCTCAAGTCCATGACCGACGTGTACCTGCTCAACCTGGCCATCTCGGAC 3859094 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | || | |||||||| ||| Sbjct 3859095 CTGCTCTTCGTGCTCTCGCTCCCCTTCTGG 3859124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583229405412000