Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq6502 129 8e-25
seq35448 118 1e-21
seq4475 113 6e-20
>seq6502
Length=3845251
Score = 129 bits (142), Expect = 8e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| ||||| ||||| | ||| || ||||||||||| || ||||| || || ||||| |
Sbjct 1107975 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 1108034
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||| ||||| ||||| ||||| |
Sbjct 1108035 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1108094
Query 39759 CAACAA 39764
| ||||
Sbjct 1108095 CTACAA 1108100
>seq35448
Length=3664250
Score = 118 bits (130), Expect = 1e-21
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| || ||||| || |||||||| || ||||| | ||
Sbjct 107722 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 107781
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||| ||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 107782 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 107841
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 107842 TTTCTTATACCAT 107854
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| || | ||| |||||||| ||||| || || || | || || || ||||| |
Sbjct 127724 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 127783
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
| || ||||||||||| || | ||||| | || || ||| |||| ||||| || ||||
Sbjct 127784 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 127843
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||||||| | ||| || || || | || | ||||| || ||||||||||
Sbjct 127844 CTAATTCCACAGTAGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 127894
Score = 86.0 bits (94), Expect = 9e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048
|||| || ||||| || | || ||||| || || || ||||| || |||||||| || |
Sbjct 123286 TAGTGCCAGCATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACTTCTCAGAAAGAAGGT 123345
Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108
|||| ||||||||||| | || ||||| | ||||| || | | || | |||||
Sbjct 123346 TGTAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCA 123405
Query 70109 ACATATGCTGAGGTC 70123
|||||||||| ||||
Sbjct 123406 ACATATGCTGTGGTC 123420
>seq4475
Length=11054148
Score = 113 bits (124), Expect = 6e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| ||||| |||||||| ||||| | ||| ||
Sbjct 3068327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 3068386
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||||||||| ||||||||||| || || ||||| || ||||| || || ||||| ||
Sbjct 3068387 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 3068446
Query 39761 AC 39762
||
Sbjct 3068447 AC 3068448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686604370606200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |