Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 163 2e-35
seq2156 116 3e-21
seq6502 111 1e-19
seq4475 86.0 5e-12
>seq1473
Length=14027634
Score = 163 bits (180), Expect = 2e-35
Identities = 282/410 (69%), Gaps = 0/410 (0%)
Strand=Plus/Minus
Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922
||||| ||||| || || || || | ||||||| | | |||||||| || |||| ||
Sbjct 9373011 GAAGGAGATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATACGAA 9372952
Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982
|| | | || |||||| | |||||| | || ||| | ||| || | || ||
Sbjct 9372951 GATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGACACA 9372892
Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042
|| ||| || | || || | || | || || |||| || ||||| |||| || |
Sbjct 9372891 ATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACACCTC 9372832
Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102
| | | ||| | ||||| || ||| | || ||||| ||||| || |||||
Sbjct 9372831 CCGCTCACGGCCCTCCCACCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAG 9372772
Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162
||||| || || ||||| | | ||||| |||||||| || || || || || |||||
Sbjct 9372771 CTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATC 9372712
Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222
|| || || |||||||||| || |||||||||||| | || | || || |||||
Sbjct 9372711 GCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGAC 9372652
Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272
|||| ||||| || ||||||| ||| |||||| | ||||||| |||||
Sbjct 9372651 CTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCC 9372602
>seq2156
Length=6750109
Score = 116 bits (128), Expect = 3e-21
Identities = 168/234 (72%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 47216 GTGTTGCAATTTTT-AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGA 47274
||| |||| ||||| |||| | || | || | || ||| | ||||||| || || ||
Sbjct 6254050 GTGCTGCAGTTTTTTAGGATTGCATAAGGAAACTGGTAAATTGGTATTTCTTGGATTGGA 6254109
Query 47275 CAATGCAGGAAAAACGGCATTACTCCACATGCTCAAAT-ACAATTGCATGAAAGAGCATA 47333
|||||||||||||| ||||||| |||||||| | || ||| | | | | |||
Sbjct 6254110 TAATGCAGGAAAAACAACATTACTACACATGCTAAGATGACA---GACTTGGACAACATG 6254166
Query 47334 ACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACAT 47393
||| || |||||||| || || ||| |||| || ||||| |||||||| |||| || |
Sbjct 6254167 TCCCAACGTTACATCCCACTTCAGAAGAACTGACCATTGCCGGCATAACCTTTACAACTT 6254226
Query 47394 TTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATG 47447
||||| | || | || |||||| || ||| ||||| |||| || ||| ||
Sbjct 6254227 TTGATCTGGGTAGGCATGCTCAAGCTCGAAGAGTGTGGAAAAACTACCTTCCTG 6254280
>seq6502
Length=3845251
Score = 111 bits (122), Expect = 1e-19
Identities = 97/118 (82%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||
Sbjct 1110206 CGGTTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 1110148
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct 1110147 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACCTACATTAAAGAT 1110090
>seq4475
Length=11054148
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| |
Sbjct 3059109 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 3059050
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 3059049 AACGAGTTTCAGAGTATCAGCG 3059028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397284256157275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |