Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1473 163 2e-35 seq2156 116 3e-21 seq6502 111 1e-19 seq4475 86.0 5e-12 >seq1473 Length=14027634 Score = 163 bits (180), Expect = 2e-35 Identities = 282/410 (69%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 ||||| ||||| || || || || | ||||||| | | |||||||| || |||| || Sbjct 9373011 GAAGGAGATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATACGAA 9372952 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 || | | || |||||| | |||||| | || ||| | ||| || | || || Sbjct 9372951 GATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGACACA 9372892 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 || ||| || | || || | || | || || |||| || ||||| |||| || | Sbjct 9372891 ATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACACCTC 9372832 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102 | | | ||| | ||||| || ||| | || ||||| ||||| || ||||| Sbjct 9372831 CCGCTCACGGCCCTCCCACCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAG 9372772 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 ||||| || || ||||| | | ||||| |||||||| || || || || || ||||| Sbjct 9372771 CTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATC 9372712 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || || || |||||||||| || |||||||||||| | || | || || ||||| Sbjct 9372711 GCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGAC 9372652 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 |||| ||||| || ||||||| ||| |||||| | ||||||| ||||| Sbjct 9372651 CTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCC 9372602 >seq2156 Length=6750109 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 47216 GTGTTGCAATTTTT-AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGA 47274 ||| |||| ||||| |||| | || | || | || ||| | ||||||| || || || Sbjct 6254050 GTGCTGCAGTTTTTTAGGATTGCATAAGGAAACTGGTAAATTGGTATTTCTTGGATTGGA 6254109 Query 47275 CAATGCAGGAAAAACGGCATTACTCCACATGCTCAAAT-ACAATTGCATGAAAGAGCATA 47333 |||||||||||||| ||||||| |||||||| | || ||| | | | | ||| Sbjct 6254110 TAATGCAGGAAAAACAACATTACTACACATGCTAAGATGACA---GACTTGGACAACATG 6254166 Query 47334 ACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACAT 47393 ||| || |||||||| || || ||| |||| || ||||| |||||||| |||| || | Sbjct 6254167 TCCCAACGTTACATCCCACTTCAGAAGAACTGACCATTGCCGGCATAACCTTTACAACTT 6254226 Query 47394 TTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATG 47447 ||||| | || | || |||||| || ||| ||||| |||| || ||| || Sbjct 6254227 TTGATCTGGGTAGGCATGCTCAAGCTCGAAGAGTGTGGAAAAACTACCTTCCTG 6254280 >seq6502 Length=3845251 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| ||||| |||||| || ||||| ||||| || |||||||| Sbjct 1110206 CGGTTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 1110148 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 1110147 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACCTACATTAAAGAT 1110090 >seq4475 Length=11054148 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 3059109 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAGGGGAAAACAAATTTCTTTGAGA 3059050 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 3059049 AACGAGTTTCAGAGTATCAGCG 3059028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397284256157275