Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq1473 141 7e-29 seq5010 84.2 2e-11 >seq1473 Length=14027634 Score = 141 bits (156), Expect = 7e-29 Identities = 483/740 (65%), Gaps = 26/740 (4%) Strand=Plus/Plus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 ||| ||| | ||||| || |||| |||||||| | || || |||| | |||||| Sbjct 9372453 AAACAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGC-CTTCAATCTGAAAGTCT 9372511 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||||| || | ||| | ||||| |||| ||||| || || || || || Sbjct 9372512 TCAGCCTTGAAGCCATCAGTTTTCTCAACTTTTCGAAGCATTTTGAGCTTCGGGAAAGGC 9372571 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | || | ||| | |||||| | || | |||| ||||||| | |||| || ||| Sbjct 9372572 CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCA 9372631 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | || | | || | |||| || || |||||||||||||||||||| Sbjct 9372632 TCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAG 9372691 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 ||||| ||| ||| || || ||||| || ||||| || |||||||| ||||| || | Sbjct 9372692 GTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGC 9372751 Query 111862 TGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAA 111921 | ||| ||||| || || || | | | ||| || || || ||||| |||| || Sbjct 9372752 TCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAG 9372811 Query 111922 GGAGGCAATGCCAT----CCCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCT 111977 || || | ||| | | | || | ||| ||||||||||| || ||||| Sbjct 9372812 GGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGAT-TCCAGGCACACATGATGATTCTTCT 9372870 Query 111978 G-CTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTAC 112036 | | ||| | | | || | ||| || | || ||| || ||||||| ||||| | Sbjct 9372871 GTCATTAGGGTTGGTTTTGATTGT-GTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGC 9372929 Query 112037 CAGTATAATCCGCCTGACATCCAGT------GTATGTTGCCCCATAGTGTCTCCATTGGA 112090 | | ||||| |||| |||| || |||| |||||| | || ||||| || | Sbjct 9372930 CTGAATAAT----CTGA-ATCC-GTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAA 9372983 Query 112091 ATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGA-AATTGCTCTCTATTCAAC 112149 | | || | || || |||||||| || | |||| ||| | || | ||| Sbjct 9372984 AGCGGTATACTGGGCCTAGATCTCC---TTCTCT-GGTGGAGAATCCCAGGCTGTCCAAG 9373039 Query 112150 AAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCA 112209 | | | | | | ||| || |||||||| || || || | ||| | || Sbjct 9373040 ACGCCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCG 9373099 Query 112210 TTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTT 112269 ||||||||||| | |||||||| |||||||| |||| ||| || |||||| | || | | Sbjct 9373100 TTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGT 9373159 Query 112270 TTAGTAGTTAGCAGTGGaaa 112289 || || || ||||||||||| Sbjct 9373160 TTGGTTGTGAGCAGTGGAAA 9373179 >seq5010 Length=10235142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||||||||| |||||||| ||||| || ||| || || ||||| || ||||| Sbjct 3047446 CCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACG 3047387 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 || |||||||| |||||||| | || || ||||| || || || Sbjct 3047386 CCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAG 3047343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391776237244165