Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3552 150 2e-31 seq2669 143 3e-29 seq459 140 4e-28 seq8041 136 5e-27 seq4088 131 2e-25 seq1683 114 1e-20 seq1720 100 3e-16 seq35440 98.7 1e-15 seq5530 86.0 7e-12 >seq3552 Length=199577 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||| ||||| || | |||||||| || || |||||||||||| | || Sbjct 80965 ATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 80906 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || |||||||| || ||||||||||| || || || |||||| Sbjct 80905 GACACCACTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 80846 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| |||||||| | || || || ||||||| ||| || | | ||||||| ||| Sbjct 80845 CAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTCCATCAGACTACAAT 80786 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || || || ||||| || || Sbjct 80785 ATTCAGAAAGAGTCCACCCTGCA 80763 >seq2669 Length=6508339 Score = 143 bits (158), Expect = 3e-29 Identities = 170/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 4561891 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4561950 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || |||||||| |||||||||||||| || || || || ||| Sbjct 4561951 GACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCAG 4562010 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT---AT 27582 |||| ||| ||||||| || || || || ||||||| | || || |||||| || Sbjct 4562011 CAGCATCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCTGTCAGACTACAAT 4562070 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | | || ||||| ||||| || || |||| ||||| | ||||| Sbjct 4562071 ATTCTTCAGAAGGAGTCCACCCTGCACTTAGTGCGTCGTCTGTGAGGTGG 4562120 >seq459 Length=3563100 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 2214119 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2214178 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || ||||| |||||||| || ||||| |||||| Sbjct 2214179 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2214238 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || || || | || || || Sbjct 2214239 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2214298 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || ||| | ||||| | ||||| Sbjct 2214299 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGG 2214345 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 2213891 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 2213950 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || ||||| |||||| Sbjct 2213951 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 2214010 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || || || | || || || Sbjct 2214011 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2214070 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| ||||||| | ||||| Sbjct 2214071 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 2214117 >seq8041 Length=9355897 Score = 136 bits (150), Expect = 5e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 8398741 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8398682 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 8398681 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8398622 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| || || || || |||| || ||||| | ||||| || Sbjct 8398621 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8398562 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| |||||||||||||| || | ||| |||| Sbjct 8398561 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCG 8398527 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 8398969 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8398910 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 8398909 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8398850 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 8398849 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8398790 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 8398789 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 8398752 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 8399197 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399138 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 8399137 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8399078 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 8399077 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8399018 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || ||| ||||||| Sbjct 8399017 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCT 8398980 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 8399425 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399366 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 8399365 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8399306 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 8399305 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8399246 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || ||| ||||||| Sbjct 8399245 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCT 8399208 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 8399653 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399594 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 8399593 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8399534 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 8399533 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8399474 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || ||| ||||||| Sbjct 8399473 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCT 8399436 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || || ||||| ||| | || Sbjct 8399881 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399822 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || ||||||||| Sbjct 8399821 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8399762 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || |||| || ||||| | ||||| || Sbjct 8399761 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8399702 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || ||| ||||||| Sbjct 8399701 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCT 8399664 >seq4088 Length=12000580 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || |||||||| ||||| || || ||||||||||| || || ||||||||||| | Sbjct 9606616 ATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACT 9606557 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || |||| ||| | ||||||||||| || || || |||||| Sbjct 9606556 GACACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACCAG 9606497 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| ||||| | || || || || ||||||| ||||| || |||| || || Sbjct 9606496 CAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACGAT 9606437 Query 27586 GTCCAAAAGGAATCCAC 27602 || || || || ||||| Sbjct 9606436 GTTCAGAAAGAGTCCAC 9606420 >seq1683 Length=8760594 Score = 114 bits (126), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||| | || || || | ||||||| | || Sbjct 1156124 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGGCCATCACCCTCG-GGTTGAGCCCAGT 1156066 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || ||||||| || ||||||||||| || || || |||||| Sbjct 1156065 GACACCACTGAGAATGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCGCCTGACCAG 1156006 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 |||| ||| |||||||| || || || || ||||| Sbjct 1156005 CAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGA 1155971 >seq1720 Length=6396105 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 27413 TCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCA 27472 ||||||| |||| || | |||||||| | || || ||||||||| | |||| | || Sbjct 3282376 TCTTTGTGAAGAGCCTGATGGGCAAGACCCTCACCCTCGAGGTTGAGCCCTGTGACACCA 3282317 Query 27473 TTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTC 27532 || ||| | | |||||||| | ||||||||||| || || || ||||||||||||| Sbjct 3282316 CTGAGAATGTCAGAGCTAAAATCAAAGACAAGGAGGGCATCCCACCTGACCAGCAGCGTC 3282257 Query 27533 TAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAA 27592 | | ||| || || | || || || || | || |||| ||||||| ||| | || | Sbjct 3282256 TGAGTTTCGCGGGCGAACAGCTGGATGAGGGCCGCACCCCGTCAGACTAGAATATTCAGA 3282197 Query 27593 AGG 27595 ||| Sbjct 3282196 AGG 3282194 >seq35440 Length=12707973 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 1771937 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1771996 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || |||||||| || ||||||||||| Sbjct 1771997 GACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGG 1772040 >seq5530 Length=3471620 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 521866 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 521925 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 521926 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 521985 Query 32245 TTCAC 32249 ||||| Sbjct 521986 TTCAC 521990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570057645559600