Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq3785 129 8e-25 >seq3785 Length=24937548 Score = 129 bits (142), Expect = 8e-25 Identities = 584/919 (64%), Gaps = 19/919 (2%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| ||||| ||| || Sbjct 6510058 GAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATCGAAATGCTC 6510117 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| || ||||| |||||||| | ||||||||| Sbjct 6510118 GACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCACGTGGACAAA 6510177 Query 13803 AAGTCCGGCGACGAGTTCATCCGGG--GC-GTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 || || ||| || | | | || || || | ||| || || ||| |||| Sbjct 6510178 AAATC---CGAGGAATCCTTTTTGGCTGCAGTGATTGGCATTGCGTCTTGTTTCAGTAAC 6510234 Query 13860 GTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCC 13919 || ||||| | ||| | |||||||| | ||| ||||| || || ||||| Sbjct 6510235 GTTTTTGTGGCCAGGCAACTGGAGAGTGTGGTGTATGCCTCGTGGAGCCGGGTTCAGGCT 6510294 Query 13920 GACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAAC 13979 ||| ||| ||||||| |||||| || | | |||| |||| || |||| Sbjct 6510295 GACATCAACTGCATGCAGGACCTCTACAAAATGAGTGCGGACTGGAAGTACTTGATCAAT 6510354 Query 13980 CTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCC 14039 || ||||| ||||| || ||| | || ||||||||||| || || || ||| ||| | Sbjct 6510355 CTCTGCGGTATGGATTTTCCGATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAGTCG 6510414 Query 14040 CTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACCGCATC 14099 | ||| ||||| ||| || | |||| |||||| ||| || | | Sbjct 6510415 TTAATGGGCGAGAACAACCTAGAAACCGAGAAAATGCCCGCCCATAA---AAAAGAAAGG 6510471 Query 14100 AGGAAGAGGCACGTGGTGGCCAGCGG----CGGCGTGGTGGTCAACACCGGCAGGAACAA 14155 |||| | |||| | ||| || || | || |||| || | |||| Sbjct 6510472 TGGAAAAAGCAC----TATACAGTGGTTAATGGAAAGCTGACAAACATGGGGACTGACAA 6510527 Query 14156 GGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCG 14215 | || || || | || | ||| | || | ||| || |||| ||||| | Sbjct 6510528 AATACATCCTCCTCTTGAAACGCCGCTGTTTTCAGGCAGCGCCTATTTTGTGGTCAGTAG 6510587 Query 14216 GGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGA 14275 | ||| |||| || || || || | || | | | ||| | ||| | Sbjct 6510588 GAAGTATGTGGGCTATGTGCTTGAGAATGAAAAAATCCAGAAGTTTATGGAGTGGGCAAA 6510647 Query 14276 GGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCC 14335 || || |||||||| |||||| | || |||||||| | ||||| ||| | | | || Sbjct 6510648 AGATACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAGGATG-CCTGAAGTCC 6510706 Query 14336 CGGGGGGATCCCCGTTCACGTC-AAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | | || | || |||||||||| || |||||| | | | ||||| Sbjct 6510707 CAGGCTCACTGTCCTTAAGTTCTAAGTACGACATGTCAGACATGCACTCTATTGCCAGGT 6510766 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | || |||||||| |||| || || || | || || |||| |||||||| ||| Sbjct 6510767 TTGTTAAGTGGCAGTACTTTGAAGGTGACGTTTCCAAGGGCGCCCCCTACCCGCCGTGCA 6510826 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGA 14514 |||||||||||| | | | | || | ||||| |||| ||| |||| ||| || | Sbjct 6510827 GCGGCATCCACGTGCGCTCTGTATGTGTTTTCGGAGCCGGTGACTTGAACTGGATGCTGC 6510886 Query 14515 GCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTGCGCT 14574 ||| | |||||||| ||||| ||||| ||| || | ||| || ||| | | | Sbjct 6510887 ACGTGCACCACCTGTTTGCCAATAAGTTTGACACAGACATAGACTTCTTTGCCATCCAGT 6510946 Query 14575 GTCTGGACGAGGACGTGCG 14593 || |||||||| | |||| Sbjct 6510947 GTTTGGACGAGCATCTGCG 6510965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658447255020800