Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1473 410 1e-109 seq5010 165 7e-36 seq2093 129 5e-25 >seq1473 Length=14027634 Score = 410 bits (454), Expect = 1e-109 Identities = 555/771 (72%), Gaps = 3/771 (0%) Strand=Plus/Plus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 ||||| |||||||||| ||||| || | || ||||| | ||||| || || | Sbjct 9372544 TCGAAGCATTTTGAGCTTCGGGAAAGGCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGG 9372603 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| |||| |||||||| || || ||||| ||||| || || || || || || || Sbjct 9372604 CTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTT 9372663 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || || || || || |||||||| |||||||||| ||| || || |||||||| || Sbjct 9372664 CAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGG 9372723 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 ||| || | ||||||||||| || || | ||| ||||||||||||||||| || ||| | Sbjct 9372724 CACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCAC 9372783 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 |||||||| ||||| |||| ||||| || ||||| ||| | || ||||| | || || Sbjct 9372784 CACGTAGAACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGG 9372843 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| || ||||| | ||| |||||||||| |||||| || | ||||| |||| Sbjct 9372844 ATTCCAGGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCAC 9372903 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | |||||| ||||| |||| | || ||||| || | || | | || || || Sbjct 9372904 CTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGC 9372963 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 |||||| || |||||||| || | ||| || ||||| | || ||| ||| | | | Sbjct 9372964 CCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATC-TCCTTCTCTGGTG--GA 9373020 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 ||| ||| | |||||| | | |||| ||||| ||||||||||| ||||| ||| Sbjct 9373021 GAATCCCAGGCTGTCCAAGACGCCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTT 9373080 Query 7027 GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 ||| || |||||||| | ||| |||| ||| | | |||||||||| ||||| | || Sbjct 9373081 GGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAAC 9373140 Query 7087 GCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCG 7146 ||||||||| | |||||||| || || ||||| |||||||| | | ||| |||| || Sbjct 9373141 ACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCG 9373200 Query 7147 GGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCC 7206 ||||| |||||||||| || ||||| || || || || ||||| |||||||| |||| Sbjct 9373201 CGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCGTCCTTCCGGGAGCC 9373260 Query 7207 CTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGCGG 7257 | |||||| | | ||| || |||||| |||||| ||||| Sbjct 9373261 GCAGCGGAGGATGTACTTAATCTGCCCCAAGTACTGCAGCTCCCCGTGCGG 9373311 Score = 410 bits (454), Expect = 1e-109 Identities = 555/771 (72%), Gaps = 3/771 (0%) Strand=Plus/Minus Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGG 34147 ||||| |||||| |||||| || ||| | | |||||| | |||| |||| Sbjct 9373311 CCGCACGGGGAGCTGCAGTACTTGGGGCAGATTAAGTACATCCTCCGCTGCGGCTCCCGG 9373252 Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207 |||| ||||| || || || || ||||| || |||||||||| ||||| || |||| | Sbjct 9373251 AAGGACGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCATGCAGGCGCGCTACAGC 9373192 Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | | |||||||| ||||| || || |||||||| | ||||||||| || | ||| Sbjct 9373191 CTCAGAGATGAATTTCCACTGCTCACAACCAAACGTGTTTTCTGGAAGGGTGTTTTGGAG 9373132 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || |||||||||| | | ||| |||| ||| | |||||||| || ||| ||| ||| Sbjct 9373131 GAATTGCTGTGGTTTATCAAGGGATCCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTG 9373072 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 || ||||||||||| ||||| |||| | | |||||| | ||| ||| | | | Sbjct 9373071 AAAATCTGGGACGCCAGTGGGTCCCGAGGCGTCTTGGACAGCCTGGGATTCTC--CACCA 9373014 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||| ||| || | ||||| || ||| | || |||||||| || |||||||| || || Sbjct 9373013 GAGAAGGA-GATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATAC 9372955 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGAC 34507 | | || | || ||||| || | |||| ||||| |||||| | |||| ||| Sbjct 9372954 GAAGATACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGAC 9372895 Query 34508 ACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGAT 34567 || | || |||||| |||||||||| ||| | ||||| || ||||| || || | Sbjct 9372894 ACAATCAAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACAC 9372835 Query 34568 CTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG 34627 ||||| || | ||| ||||| || ||||| |||| ||||| |||||||| | ||| || Sbjct 9372834 CTCCCGCTCACGGCCCTCCCACCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGT 9372775 Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 ||||||||||||||||| ||| | || || ||||||||||| | || ||||| |||||| Sbjct 9372774 GAGCTGTCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAAC 9372715 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 || || || ||| |||||||||| |||||||| || || || || || || || Sbjct 9372714 ATCGCCAGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGT 9372655 Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807 || || || || || ||||| ||||| || || |||||||| |||| |||| || Sbjct 9372654 GACCTTGTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCCACTGAAA 9372595 Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGA 34858 || ||||| | ||||| || | || ||||| |||||||||| ||||| Sbjct 9372594 ATGCAGCTTCCGCGAGAACCAAGGCCTTTCCCGAAGCTCAAAATGCTTCGA 9372544 >seq5010 Length=10235142 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||| || ||||| ||||| || |||||| |||| ||||| |||||||| | ||| Sbjct 3047277 GATCTCCCGCTCATGGCCCTCCCGCCCTGCCACGCCCTTTGCCAGTTCTACGTGGTGAAC 3047336 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || || |||||||||||||| | || ||||| ||| Sbjct 3047337 GGTGAGCTGTCCTGCCAGCTGTACCAGCGGTCGGGAGACATGGGCCTGGGCGTGCCCTTC 3047396 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||| | |||||||| ||||||||||| || Sbjct 3047397 AACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCACA 3047437 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | ||| || || |||||||| ||||| || | ||| Sbjct 3047437 TGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 3047378 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| || || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 3047377 ATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGG 3047318 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| || ||||| ||||| || |||||||| Sbjct 3047317 CAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 3047277 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | |||||||| || ||| ||| ||||| ||||||||||| | ||||| | Sbjct 3044056 CCACAAACGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGACGCCAATGGGTCCC 3044115 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||| |||||| | ||| ||| | | | || || || || | |||||||| | Sbjct 3044116 GAGACTTCTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGAGATCTAGGCCCGGTTT 3044175 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| || || ||||| || |||||||| || || Sbjct 3044176 ACGGCTTTCAATGGAGGCATTTTGGGGCCGAATA 3044209 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||| || || ||||| |||||||| | || || || || Sbjct 3044209 TATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCT 3044150 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||| |||||||| ||||| | ||||||||||| ||| Sbjct 3044149 CTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTC 3044090 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || |||||||| | ||| |||| Sbjct 3044089 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGG 3044056 >seq2093 Length=2641275 Score = 129 bits (142), Expect = 5e-25 Identities = 335/513 (65%), Gaps = 37/513 (7%) Strand=Plus/Plus Query 6653 GCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGAC 6712 || |||||||| ||||| || | ||| ||| ||| || | || | ||| |||||||| Sbjct 1091079 GCGATGTTGAAGGGCACACCCAGGCCCCTGTGTCCAGACCAGTGGCACAGCCGGCAGGAC 1091138 Query 6713 AGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGA 6772 ||||| || | ||||| ||||| |||| |||| ||||||||| |||| ||| Sbjct 1091139 AGCTCACC-------TCCTAGAACTGGCAAAGGGCATGGCCCGGGGGGAGGGCCAGGAGA 1091191 Query 6773 GGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC 6832 || ||||| || || ||||| || |||| | ||| |||||||| ||| |||| || Sbjct 1091192 GGAAGATCTTTGGGATTCCAAGCACACAGGATGATTCTTCTGTCGTCAAGGTTGGTTTTG 1091251 Query 6833 AAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAA-TAGTCCGCTTCGCT 6891 | |||| ||| | ||| ||||| ||||||| |||||| || || | || | Sbjct 1091252 ATCATGTCAGCCACCGTTTACAGTTGGTCTACTCCCTGACCCGAATTAATCTGAATCCAT 1091311 Query 6892 CCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 | || || | || || || |||| || || ||||| || || || Sbjct 1091312 ATCTTCGTATTCGGATCCCAAATGCCTCC-----------TACACTGGGCCTAAATC-CC 1091359 Query 6952 CTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCA 7011 || |||| | | ||| ||| | |||| |||||||| ||||| | || ||||| Sbjct 1091360 CT--TCCCTGGTGGAGAATCCCAGGCTGTCGGAGAAGTCTCGGGACCCATTGGCATCCCA 1091417 Query 7012 GATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAG 7071 ||| || ||||||| |||| ||| | | | |||||||| Sbjct 1091418 ---------------GGAAGACAGCTCCTCAATGTTTGTGAATTTCGTGATAAACCACAG 1091462 Query 7072 CAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCC 7131 || |||||| || | |||||| | ||||||| || |||| ||| ||||| || | Sbjct 1091463 CAACTCCTCCCAAACACTTTTCCAGAAACCACGTTTGGTTGTCACCAGGGGAAACTCATC 1091522 Query 7132 CCGAAGGTTGTATCGGGCCTGTGTGCCGAACAC 7164 | ||| |||| || ||||| |||| |||||| Sbjct 1091523 TCTCAGGCTGTAGCGCGCCTGCGTGCGGAACAC 1091555 Score = 129 bits (142), Expect = 5e-25 Identities = 335/513 (65%), Gaps = 37/513 (7%) Strand=Plus/Minus Query 34181 GTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAA 34240 |||||| |||| ||||| || |||| ||| | | || ||||| ||| |||| || ||| Sbjct 1091555 GTGTTCCGCACGCAGGCGCGCTACAGCCTGAGAGATGAGTTTCCCCTGGTGACAACCAAA 1091496 Query 34241 CGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAAC 34300 |||| | |||||| | || |||||| |||||||||| | | | ||| ||| Sbjct 1091495 CGTGGTTTCTGGAAAAGTGTTTGGGAGGAGTTGCTGTGGTTTATCACGAAATTCACAAAC 1091436 Query 34301 ACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTT 34360 | ||||||| || ||| ||||| || | ||||| |||||||| Sbjct 1091435 ATTGAGGAGCTGTCTTCC---------------TGGGATGCCAATGGGTCCCGAGACTTC 1091391 Query 34361 CTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 |||| | ||| ||| | | |||| |||| || || ||||| || || Sbjct 1091390 TCCGACAGCCTGGGATTCTCCACCAGGGA--AGGG-GATTTAGGCCCAGTGTA------- 1091341 Query 34421 CAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTA-TTCGGGACAGGG 34479 |||| || || || | || || | | || | || || |||||| ||||| Sbjct 1091340 ----GGAGGCATTTGGGATCCGAATACGAAGATATGGATTCAGATTAATTCGGGTCAGGG 1091285 Query 34480 AGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGAT 34539 || ||||| ||| | ||| |||| | || |||| ||| |||||||| || Sbjct 1091284 AGTAGACCAACTGTAAACGGTGGCTGACATGATCAAAACCAACCTTGACGACAGAAGAAT 1091225 Query 34540 CGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACAC 34599 | | |||| || ||||| || || ||||| ||||| |||| ||||||||| |||| | Sbjct 1091224 CATCCTGTGTGCTTGGAATCCCAAAGATCTTCCTCTCCTGGCCCTCCCCCCGGGCCATGC 1091165 Query 34600 CCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGG 34659 ||| ||||| ||||| | || ||||||||||||| ||| | || | || || Sbjct 1091164 CCTTTGCCAGTTCTAGGA-------GGTGAGCTGTCCTGCCGGCTGTGCCACTGGTCTGG 1091112 Query 34660 AGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 | ||| ||| | || ||||| |||||||| || Sbjct 1091111 ACACAGGGGCCTGGGTGTGCCCTTCAACATCGC 1091079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448063735707600