Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq8309 178 1e-39 seq1275 138 9e-28 seq1473 127 2e-24 seq5766 122 7e-23 seq2156 109 5e-19 >seq8309 Length=14478951 Score = 178 bits (196), Expect = 1e-39 Identities = 190/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || |||||||| | ||||| |||||||||||| | || || |||||| ||||||||| Sbjct 4494973 CCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCGGAAAACATG 4495032 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| || || | |||| |||||||| || ||||| || || || || || || ||| Sbjct 4495033 ATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAAC 4495092 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || | || ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 4495093 ATCACCCAACTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 4495152 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || ||||| |||||||| | || || || ||||| ||||||||||| |||||| ||| Sbjct 4495153 GAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 4495212 Query 1515 TGTCTAACCCT 1525 || || ||||| Sbjct 4495213 TGCCTCACCCT 4495223 >seq1275 Length=2626219 Score = 138 bits (152), Expect = 9e-28 Identities = 364/549 (66%), Gaps = 25/549 (5%) Strand=Plus/Minus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || |||| || || || || || | ||||| ||||| || | | Sbjct 1848440 GCTGTGTCCCAGAACATGGATATGGGCAAGAATGGGGACCTGCCCTGGCCCCCGGTCAGG 1848381 Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271 |||||||| || | || |||| |||||| | | |||| | || || ||| | Sbjct 1848380 AATGAATTCAAGTACTTCCAAAGAATGACCACAGCCTCTTTAGCAGAAGGTAAGCAGCGT 1848321 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTC-ACTTCCCATTAAAAGCA--GGCCTTTG 2328 | || |||||||| |||||||| ||||| || ||| || | ||| | | ||||| Sbjct 1848320 TTGGTGATTATGGGTAGAAAGACCTGGTTCTCCACT---CAAGAGAAGGACTGACCTTTA 1848264 Query 2329 AACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCAC 2388 || ||||||| | | | ||||| |||||| | || | || | |||| || ||||| Sbjct 1848263 AAGGACAGAATTAGTTTAGTTCTAAGTAGAGAACTCAGGGAACTTCCACA-GGAGCTCAT 1848205 Query 2389 TTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGAC 2448 ||| ||| |||||| | ||| | || | || |||| ||||||||||| | | Sbjct 1848204 TTTTTTGACAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAACCAGAATTAACAAAT 1848145 Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT-ACAAG 2507 | |||| | |||||||| | || || || ||||| || |||| ||| ||||| Sbjct 1848144 TAAGCAGATATGGTTTGGATAGTGGGAGGTAGCTCTGTTTA--AGGAAGCCATGGACAAG 1848087 Query 2508 -------ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTG 2560 ||||| | ||| | |||||||| |||| ||||||| ||| Sbjct 1848086 CCAGGTCATCTTAGATTATCCTGCAGG-----ACAAGGATCATGCAGGAATTTGAGAGTG 1848032 Query 2561 ATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620 | || || | ||||| | || | ||||| |||| ||| | |||| |||||||| Sbjct 1848031 GCATATTTTTTCTAGAAACTGATTTGGAAAAATATAAACTTCTTCCAGAATATCCAGGTG 1847972 Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680 ||||||||| || || || |||| || |||| ||||||||||| |||||||||| | Sbjct 1847971 TTCCCTCTGATGTCCAGGAGAAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGA 1847912 Query 2681 aaaCATAAT 2689 | | |||| Sbjct 1847911 ACAATTAAT 1847903 >seq1473 Length=14027634 Score = 127 bits (140), Expect = 2e-24 Identities = 403/617 (65%), Gaps = 21/617 (3%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | ||||||||||||| ||||||||| || | || ||||| || | || ||| Sbjct 9372587 AGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 9372646 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | | ||||| || | || ||||| | ||| ||||||||||| || | || | |||| Sbjct 9372647 ACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAG 9372706 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || || || || ||||| ||||||||| |||| | || |||| ||||| Sbjct 9372707 CTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAG 9372766 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || ||||| ||||| | || || ||||| | | | || || || || || || || Sbjct 9372767 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTG 9372826 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTG-CTATATGGT 118749 || || ||||||||||| | ||||| |||||| | || ||| Sbjct 9372827 AGCGGGAGGTGTTTTGGATTCCAGGC-----ACACATGATGATTCTTCTGTCATTAGGGT 9372881 Query 118750 TCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGA 118809 | || || ||| | | ||||| | || || || || || || | ||| | Sbjct 9372882 TGGTTTTG-ATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCT 9372940 Query 118810 GACT-CGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCC 118868 || | || || ||| ||||| ||||||||| ||||| ||||| | || || || || Sbjct 9372941 GAATCCGTAT-CTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCC 9372999 Query 118869 CAGATCTCC--CTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCA 118926 |||||||| || | | |||| || | || | | || |||||| Sbjct 9373000 TAGATCTCCTTCTCTGGTGGAGAATC----CCAGGCTGTC-CAAGACGCCTCGGGACCCA 9373054 Query 118927 TTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTT 118986 | || | ||| || ||||| || | ||| || |||| |||||| || || | Sbjct 9373055 CTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTG 9373114 Query 118987 AAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGT 119046 | |||||| || | ||||| | ||| || |||| ||||| ||| ||||| | |||| Sbjct 9373115 ATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGT 9373174 Query 119047 GGAAACTGACCTCTAAG 119063 ||||| | | |||| || Sbjct 9373175 GGAAATTCATCTCTGAG 9373191 >seq5766 Length=15090592 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 710190 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 710249 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 710250 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 710309 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 710310 ATCGCCCTGTGGATGACTGA 710329 >seq2156 Length=6750109 Score = 109 bits (120), Expect = 5e-19 Identities = 228/334 (68%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || ||||| || || || || | | |||| |||| || || | ||||||||||| Sbjct 6386330 AACATGGGTATCGGCAAGAACAGGGACCTGCACTGGCACCCACTCAGGAATGAATTTAAG 6386389 Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283 |||| ||| |||||| | | ||||| || ||||||||| | || ||||| Sbjct 6386390 TATTTCAAAAGAATGACCACAGCCTCTTCAGTAGAAGGTAAACAGAATTTGGTGATTATT 6386449 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAACA-ACAGAATAAA 2342 || |||||||| ||||| || |||| || | | ||||| || ||||||| || Sbjct 6386450 GGTAGAAAGACCTGGTTCTCCATTCCAGAGAAGAATCGACCTTTAAAAGGACAGAATTAA 6386509 Query 2343 TCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAG 2402 | | |||||||||||| | | || || || |||| || ||||| ||| |||| | ||| Sbjct 6386510 TTTAGTTCTCAGTAGAGAATTCAAGGAACCTCCACAAGGAGCTCATTTTCTTGCCAGAAG 6386569 Query 2403 TATAGATCACGCTCTGGAAATTATAATAG-GACCAGAATTAAAAGACAGGGTGGATAAGA 2461 | | ||| | || || ||| | ||| || |||||||| ||| | ||||| | Sbjct 6386570 TCTGGATGATGC-CTTAAAACTTACCTAGCAACTAGAATTAACAGATAAAGTGGACATAG 6386628 Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 |||||| | ||| || || ||||| ||| |||| Sbjct 6386629 TTTGGA-CAGTGGAGGCAGTTCTGTTTATAAGGA 6386661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414297701336620