Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq8309 178 1e-39
seq1275 138 9e-28
seq1473 127 2e-24
seq5766 122 7e-23
seq2156 109 5e-19
>seq8309
Length=14478951
Score = 178 bits (196), Expect = 1e-39
Identities = 190/251 (76%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334
|| |||||||| | ||||| |||||||||||| | || || |||||| |||||||||
Sbjct 4494973 CCCCAAGAAGTCTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCGGAAAACATG 4495032
Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394
||| || || | |||| |||||||| || ||||| || || || || || || |||
Sbjct 4495033 ATCACCTTCAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTATAAGGACAAGATAAAC 4495092
Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454
|| || | || ||||| ||| |||| || ||||||||||| || || ||||| |||
Sbjct 4495093 ATCACCCAACTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 4495152
Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514
|| ||||| |||||||| | || || || ||||| ||||||||||| |||||| |||
Sbjct 4495153 GAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 4495212
Query 1515 TGTCTAACCCT 1525
|| || |||||
Sbjct 4495213 TGCCTCACCCT 4495223
>seq1275
Length=2626219
Score = 138 bits (152), Expect = 9e-28
Identities = 364/549 (66%), Gaps = 25/549 (5%)
Strand=Plus/Minus
Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214
||||| || | || |||| || || || || || | ||||| ||||| || | |
Sbjct 1848440 GCTGTGTCCCAGAACATGGATATGGGCAAGAATGGGGACCTGCCCTGGCCCCCGGTCAGG 1848381
Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271
|||||||| || | || |||| |||||| | | |||| | || || ||| |
Sbjct 1848380 AATGAATTCAAGTACTTCCAAAGAATGACCACAGCCTCTTTAGCAGAAGGTAAGCAGCGT 1848321
Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTC-ACTTCCCATTAAAAGCA--GGCCTTTG 2328
| || |||||||| |||||||| ||||| || ||| || | ||| | | |||||
Sbjct 1848320 TTGGTGATTATGGGTAGAAAGACCTGGTTCTCCACT---CAAGAGAAGGACTGACCTTTA 1848264
Query 2329 AACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCAC 2388
|| ||||||| | | | ||||| |||||| | || | || | |||| || |||||
Sbjct 1848263 AAGGACAGAATTAGTTTAGTTCTAAGTAGAGAACTCAGGGAACTTCCACA-GGAGCTCAT 1848205
Query 2389 TTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGAC 2448
||| ||| |||||| | ||| | || | || |||| ||||||||||| | |
Sbjct 1848204 TTTTTTGACAAAAGTCTGGATGATGCCTTAAAACTTATTGAGCAACCAGAATTAACAAAT 1848145
Query 2449 AGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT-ACAAG 2507
| |||| | |||||||| | || || || ||||| || |||| ||| |||||
Sbjct 1848144 TAAGCAGATATGGTTTGGATAGTGGGAGGTAGCTCTGTTTA--AGGAAGCCATGGACAAG 1848087
Query 2508 -------ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTG 2560
||||| | ||| | |||||||| |||| ||||||| |||
Sbjct 1848086 CCAGGTCATCTTAGATTATCCTGCAGG-----ACAAGGATCATGCAGGAATTTGAGAGTG 1848032
Query 2561 ATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTG 2620
| || || | ||||| | || | ||||| |||| ||| | |||| ||||||||
Sbjct 1848031 GCATATTTTTTCTAGAAACTGATTTGGAAAAATATAAACTTCTTCCAGAATATCCAGGTG 1847972
Query 2621 TTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaa 2680
||||||||| || || || |||| || |||| ||||||||||| |||||||||| |
Sbjct 1847971 TTCCCTCTGATGTCCAGGAGAAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGA 1847912
Query 2681 aaaCATAAT 2689
| | ||||
Sbjct 1847911 ACAATTAAT 1847903
>seq1473
Length=14027634
Score = 127 bits (140), Expect = 2e-24
Identities = 403/617 (65%), Gaps = 21/617 (3%)
Strand=Plus/Plus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515
|| || | ||||||||||||| ||||||||| || | || ||||| || | || |||
Sbjct 9372587 AGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGT 9372646
Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575
| | ||||| || | || ||||| | ||| ||||||||||| || | || | ||||
Sbjct 9372647 ACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAG 9372706
Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635
||||| | || || || || ||||| ||||||||| |||| | || |||| |||||
Sbjct 9372707 CTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAG 9372766
Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695
|| ||||| ||||| | || || ||||| | | | || || || || || || ||
Sbjct 9372767 GACAGCTCACCGTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTG 9372826
Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG-----CCTTCTG-CTATATGGT 118749
|| || ||||||||||| | ||||| |||||| | || |||
Sbjct 9372827 AGCGGGAGGTGTTTTGGATTCCAGGC-----ACACATGATGATTCTTCTGTCATTAGGGT 9372881
Query 118750 TCTACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGA 118809
| || || ||| | | ||||| | || || || || || || | ||| |
Sbjct 9372882 TGGTTTTG-ATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCT 9372940
Query 118810 GACT-CGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCC 118868
|| | || || ||| ||||| ||||||||| ||||| ||||| | || || || ||
Sbjct 9372941 GAATCCGTAT-CTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCC 9372999
Query 118869 CAGATCTCC--CTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCA 118926
|||||||| || | | |||| || | || | | || ||||||
Sbjct 9373000 TAGATCTCCTTCTCTGGTGGAGAATC----CCAGGCTGTC-CAAGACGCCTCGGGACCCA 9373054
Query 118927 TTAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTT 118986
| || | ||| || ||||| || | ||| || |||| |||||| || || |
Sbjct 9373055 CTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTG 9373114
Query 118987 AAAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGT 119046
| |||||| || | ||||| | ||| || |||| ||||| ||| ||||| | ||||
Sbjct 9373115 ATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGT 9373174
Query 119047 GGAAACTGACCTCTAAG 119063
||||| | | |||| ||
Sbjct 9373175 GGAAATTCATCTCTGAG 9373191
>seq5766
Length=15090592
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 710190 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 710249
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 710250 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 710309
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 710310 ATCGCCCTGTGGATGACTGA 710329
>seq2156
Length=6750109
Score = 109 bits (120), Expect = 5e-19
Identities = 228/334 (68%), Gaps = 7/334 (2%)
Strand=Plus/Plus
Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226
|| ||||| || || || || | | |||| |||| || || | |||||||||||
Sbjct 6386330 AACATGGGTATCGGCAAGAACAGGGACCTGCACTGGCACCCACTCAGGAATGAATTTAAG 6386389
Query 2227 CATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATGTTGTAATTATG 2283
|||| ||| |||||| | | ||||| || ||||||||| | || |||||
Sbjct 6386390 TATTTCAAAAGAATGACCACAGCCTCTTCAGTAGAAGGTAAACAGAATTTGGTGATTATT 6386449
Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAACA-ACAGAATAAA 2342
|| |||||||| ||||| || |||| || | | ||||| || ||||||| ||
Sbjct 6386450 GGTAGAAAGACCTGGTTCTCCATTCCAGAGAAGAATCGACCTTTAAAAGGACAGAATTAA 6386509
Query 2343 TCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAG 2402
| | |||||||||||| | | || || || |||| || ||||| ||| |||| | |||
Sbjct 6386510 TTTAGTTCTCAGTAGAGAATTCAAGGAACCTCCACAAGGAGCTCATTTTCTTGCCAGAAG 6386569
Query 2403 TATAGATCACGCTCTGGAAATTATAATAG-GACCAGAATTAAAAGACAGGGTGGATAAGA 2461
| | ||| | || || ||| | ||| || |||||||| ||| | ||||| |
Sbjct 6386570 TCTGGATGATGC-CTTAAAACTTACCTAGCAACTAGAATTAACAGATAAAGTGGACATAG 6386628
Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495
|||||| | ||| || || ||||| ||| ||||
Sbjct 6386629 TTTGGA-CAGTGGAGGCAGTTCTGTTTATAAGGA 6386661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414297701336620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |