Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 309 2e-79
seq5010 156 3e-33
seq2156 95.1 1e-14
seq2315 82.4 6e-11
>seq1473
Length=14027634
Score = 309 bits (342), Expect = 2e-79
Identities = 477/687 (69%), Gaps = 4/687 (1%)
Strand=Plus/Plus
Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670
|||||||| || || || | | ||||| || |||| || || ||| | |||||
Sbjct 9372563 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 9372621
Query 29671 GACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29730
| ||| |||||||||| ||||| |||| || || || | || || |||| ||| ||
Sbjct 9372622 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 9372681
Query 29731 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTC 29790
|||||||| ||||| |||||||||||||||||||| |||||||| || || ||||||||
Sbjct 9372682 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTC 9372741
Query 29791 CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 29850
||||||| || || |||||||| || ||||| |||| |||||| ||||| || |
Sbjct 9372742 TCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAAG 9372801
Query 29851 GGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGAT 29910
||||||||| || || |||||| |||| | || ||| || ||||||||||||| |||
Sbjct 9372802 GGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGAT 9372861
Query 29911 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 29970
||| | ||||| | |||||| | |||| ||| | || ||||| || || ||
Sbjct 9372862 GATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTAC 9372921
Query 29971 CCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTG 30030
|| | || || || |||| | ||||||||||||||
Sbjct 9372922 TCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTG 9372981
Query 30031 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30090
|| | ||| || || || || |||| |||| ||| ||| ||| |||||||
Sbjct 9372982 AAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCAA 9373038
Query 30091 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30150
| | ||| ||| || ||||||||||||| || || ||||| || ||||| || |
Sbjct 9373039 GACGCCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGC 9373098
Query 30151 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30210
||||||||| || ||| |||||||||| ||||||| || ||||||| || || |
Sbjct 9373099 GTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACG 9373158
Query 30211 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCCTGAGACCCAAACAT 30270
||||| ||||| || ||||| | | |||||| ||| | |||||| || ||||
Sbjct 9373159 TTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACAC 9373218
Query 30271 GGACAAGACTCCCGTGCCTGTCCTGTC 30297
|||| | || ||||| || | |||
Sbjct 9373219 CGACAGGGTGCCGGTGCCCGTGCGGTC 9373245
>seq5010
Length=10235142
Score = 156 bits (172), Expect = 3e-33
Identities = 133/164 (81%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 3047449 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 3047390
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || |||| |||||| |||||||| || ||||| |||| |
Sbjct 3047389 ACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 3047330
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877
||||| ||||| || | ||| ||||| || || |||||||||||
Sbjct 3047329 ACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAG 3047286
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||| || || ||||| ||||| || || ||||| ||||| ||| |||
Sbjct 3044197 AAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATCTCCTTCTTCTCTGGTGGAGAAT 3044138
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||| ||||||| ||| || |||||||||||||| || || |||||
Sbjct 3044137 CCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAA 3044078
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| ||||| || | ||||||||| ||
Sbjct 3044077 GACAGCTCCTTAGCGTTTGTGGATCC 3044052
>seq2156
Length=6750109
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/236 (69%), Gaps = 8/236 (3%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTC-TC 114320
||||||||| || || || || | || || ||||| |||| || | ||||| |
Sbjct 6386555 ATGAGCTCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTT 6386496
Query 114321 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 114380
| | ||||| |||||| || || ||||||||||| ||||||||||| || ||||||| |
Sbjct 6386495 TTAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAAT 6386436
Query 114381 TCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 114440
|||| |||||| | ||||| | | ||||| | || | ||||| || || |
Sbjct 6386435 TCTGTTTACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCC 6386376
Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 114495
||| || ||||| |||| || | ||| || ||||| |||||| |||||
Sbjct 6386375 TGAGT------GGGTGCCAGTGCAGGTCCCTGTTCTTGCCGATACCCATGTTCTGG 6386326
>seq2315
Length=13333760
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || ||||| || | || | ||||| | | ||||| |||||| || ||
Sbjct 1935678 TTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 1935619
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| |||||||||||||| ||||||| || || ||||||
Sbjct 1935618 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGTTTACCT 1935571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405987693708130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |