Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3956 114 1e-20 seq6502 107 2e-18 seq4475 107 2e-18 seq2165 89.7 4e-13 seq4675 87.8 2e-12 >seq3956 Length=2629880 Score = 114 bits (126), Expect = 1e-20 Identities = 212/304 (70%), Gaps = 9/304 (3%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATT-CAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || || || |||||||| ||| || || || | ||||| |||| |||||| || |||| Sbjct 1808791 GCCCTTGTGAAAACCGACATTTCAGATAGCTCTTCCTTCTGGGTACTACGGGAGAGTAGC 1808850 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||||| | |||||||| || || || || || ||||| | |||| Sbjct 1808851 TCCACGTTCAGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGA 1808910 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| |||| |||||| ||||| |||| | ||||||||||| |||||| | | || Sbjct 1808911 AGATTATACAGGAAATGTTGGTGTTGTACTATTTAATTTTGGCAAAGAAAAGT-TTGAAG 1808969 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 | |||||||| ||| | | || || || ||||| ||| | || || |||| Sbjct 1808970 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACAGATTTTCCACCCAGAAAT 1809027 Query 32002 AGAAGTAGCT-AATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCG 32060 ||| | || | || | | ||||| ||| |||| ||| | ||| ||||| || || | Sbjct 1809028 AGAGGAAGTTCAAGTGT-TAGATGACACTGAAAGGGGCTCAGGAGGTTTTGGTTCCACTG 1809086 Query 32061 GAAA 32064 |||| Sbjct 1809087 GAAA 1809090 >seq6502 Length=3845251 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || ||||| || | || ||||| | |||| ||| || Sbjct 1107977 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 1108036 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 1108037 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1108096 Query 4692 AC 4693 || Sbjct 1108097 AC 1108098 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 1110091 TCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 1110150 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 1110151 ATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTC 1110194 >seq4475 Length=11054148 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| || ||||| || ||||| || | || ||||| | ||||||||| | Sbjct 3068325 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 3068384 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | |||||||||||||| ||||| || || || ||||| || ||||| || || ||||| | Sbjct 3068385 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3068444 Query 4690 CTAC 4693 | || Sbjct 3068445 CCAC 3068448 >seq2165 Length=8260879 Score = 89.7 bits (98), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || || ||| ||||| || |||| ||||| |||||| ||| || |||| Sbjct 6906085 GCCCTTGTGAAGACCAGCATTCAGATAGCTTTCCCTTCTGGGTGCCTTGGAGGAGCAGCT 6906144 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | || || |||| | |||||||| || || || || || ||||| |||||| | Sbjct 6906145 CCATGTTCAGGCCTGGCTGCAAAACACTTCATGGATGTAGGAGCTGGTGTCATAGATGAA 6906204 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 || || |||||||| ||||| ||| | ||||||||||| |||||| Sbjct 6906205 GATTACAGAGGAAATGTTGGTGTTGCACTATTTAATTTTGGCAAAGAAAA 6906254 >seq4675 Length=438987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || |||||||| ||||| || || | ||||| ||| ||| || | || | Sbjct 260830 GCCCTCGTGAAAACCGACATTCAGATAGCTCTTCCTTCTGGGCGCTGTGGGAAAGCAGTT 260889 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || | || || ||||| | |||||||| || || || || || ||||| |||||| | Sbjct 260890 CCACGTTCAGGCTTGGCTGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAA 260949 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 || |||||||||| ||||| ||| | ||||||||||| Sbjct 260950 GATCATAGAGGAAATGTTGGTGGTGTACTATTTAATTTTGG 260990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426865068531515