Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq35448 127 3e-24 seq6502 111 2e-19 seq4475 93.3 6e-14 seq3956 91.5 2e-13 >seq35448 Length=3664250 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | || Sbjct 107722 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 107781 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||||||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 107782 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 107841 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 107842 TTTCTTATACCAT 107854 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || ||||| ||||| |||||||| || |||||||| || || Sbjct 123287 AGTGCCAGCATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACTTCTCAGAAAGAAGGTT 123346 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||| ||||||||||| | || || || || ||||| || || | ||| | |||||| Sbjct 123347 GTAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAA 123406 Query 78518 CATATGCTGAGGTCTTTCAACC 78539 ||||||||| ||||| ||| || Sbjct 123407 CATATGCTGTGGTCTCTCAGCC 123428 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | || Sbjct 116019 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 116078 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || |||||||| ||||| || | ||| |||||||| | || || ||||||| || Sbjct 116079 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 116138 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 116139 TCCAGGTAAATAGCAAATGCACCAGGTCG 116167 >seq6502 Length=3845251 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 1107977 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 1108036 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 1108037 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 1108095 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| | Sbjct 1106584 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 1106643 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| || Sbjct 1106644 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1106703 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 1106704 CATAAAGTCAAATGGATT 1106721 >seq4475 Length=11054148 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | || | Sbjct 3068325 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 3068384 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | ||||||||||| || || ||||| || || ||||| || ||||| || || ||||| | Sbjct 3068385 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3068444 Query 48283 C 48283 | Sbjct 3068445 C 3068445 >seq3956 Length=2629880 Score = 91.5 bits (100), Expect = 2e-13 Identities = 243/363 (67%), Gaps = 20/363 (6%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||||| | |||||||| |||||| ||| |||||| Sbjct 1809088 TCCAGTGGAACCAAAACCTCCTGAGC--CCCTTTCAGTGTCATCTAACACTTGAACTTCC 1809031 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || | | || ||| | | || || || || |||| ||||||| | || Sbjct 1809030 TCTATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1808971 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | || | || |||| | ||| |||||||| Sbjct 1808970 ACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGTATAATCT 1808911 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||| | || || |||| ||||| || |||| || || || || | ||| Sbjct 1808910 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGAACGTGGA 1808851 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCG-AATATCTGTTTTAATCA 46165 |||| ||| || || ||||| || | || ||| | ||| || ||||| | || Sbjct 1808850 GCTACTCTCCCGTAGTACCCAGAA----GGAAGAGCTATCTGAAATGTCGGTTTTCA-CA 1808796 Query 46166 ATCTCCTTTCTCCAGGAGGGAT--AGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223 | || ||||||| | | ||| || || |||| |||||||| | ||||| || || Sbjct 1808795 AGGGCC-TTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCCGC 1808737 Query 46224 TGC 46226 || Sbjct 1808736 GGC 1808734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694360931471200