Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq35448 127 3e-24
seq6502 111 2e-19
seq4475 93.3 6e-14
seq3956 91.5 2e-13
>seq35448
Length=3664250
Score = 127 bits (140), Expect = 3e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | ||
Sbjct 107722 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 107781
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| ||||||||||| |||||||| |||||||| ||||| || || | | ||||||
Sbjct 107782 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 107841
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 107842 TTTCTTATACCAT 107854
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||
Sbjct 123287 AGTGCCAGCATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACTTCTCAGAAAGAAGGTT 123346
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517
||| ||||||||||| | || || || || ||||| || || | ||| | ||||||
Sbjct 123347 GTAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAA 123406
Query 78518 CATATGCTGAGGTCTTTCAACC 78539
||||||||| ||||| ||| ||
Sbjct 123407 CATATGCTGTGGTCTCTCAGCC 123428
Score = 89.7 bits (98), Expect = 7e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || || || | || | ||
Sbjct 116019 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 116078
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
|| || |||||||| ||||| || | ||| |||||||| | || || ||||||| ||
Sbjct 116079 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 116138
Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151
|| || || || || | | ||||||||
Sbjct 116139 TCCAGGTAAATAGCAAATGCACCAGGTCG 116167
>seq6502
Length=3845251
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || |||
Sbjct 1107977 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 1108036
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||||| || ||||| ||||||||||| || ||||| || || ||||| ||
Sbjct 1108037 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 1108095
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/138 (76%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851
||| |||||| |||| || | |||| ||| ||| | || ||||| |||||||| |
Sbjct 1106584 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCCATCCT 1106643
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
||||| || || || | ||||| || || ||||| || ||||||| ||| ||||| ||
Sbjct 1106644 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 1106703
Query 47912 CATAAAATCAAATGGATT 47929
|||||| |||||||||||
Sbjct 1106704 CATAAAGTCAAATGGATT 1106721
>seq4475
Length=11054148
Score = 93.3 bits (102), Expect = 6e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222
|||||||||| || || | ||| || ||||| ||||| || ||||| || || | || |
Sbjct 3068325 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 3068384
Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282
| ||||||||||| || || ||||| || || ||||| || ||||| || || ||||| |
Sbjct 3068385 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3068444
Query 48283 C 48283
|
Sbjct 3068445 C 3068445
>seq3956
Length=2629880
Score = 91.5 bits (100), Expect = 2e-13
Identities = 243/363 (67%), Gaps = 20/363 (6%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||||| | |||||||| |||||| ||| ||||||
Sbjct 1809088 TCCAGTGGAACCAAAACCTCCTGAGC--CCCTTTCAGTGTCATCTAACACTTGAACTTCC 1809031
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || | | || ||| | | || || || || |||| ||||||| | ||
Sbjct 1809030 TCTATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1808971
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | || | || |||| | ||| ||||||||
Sbjct 1808970 ACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGTATAATCT 1808911
Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||| | || || |||| ||||| || |||| || || || || | |||
Sbjct 1808910 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGAACGTGGA 1808851
Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCG-AATATCTGTTTTAATCA 46165
|||| ||| || || ||||| || | || ||| | ||| || ||||| | ||
Sbjct 1808850 GCTACTCTCCCGTAGTACCCAGAA----GGAAGAGCTATCTGAAATGTCGGTTTTCA-CA 1808796
Query 46166 ATCTCCTTTCTCCAGGAGGGAT--AGTATAGTCGTACGCACTGTATAAATCATATCCTGC 46223
| || ||||||| | | ||| || || |||| |||||||| | ||||| || ||
Sbjct 1808795 AGGGCC-TTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCCGC 1808737
Query 46224 TGC 46226
||
Sbjct 1808736 GGC 1808734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694360931471200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |