Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq35448 132 7e-26
seq6502 111 2e-19
seq4475 107 3e-18
>seq35448
Length=3664250
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | ||
Sbjct 107722 TGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATTGAC 107781
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||||||| ||||||||||||||||| ||||| || || | | ||||||
Sbjct 107782 TCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 107841
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 107842 TTTCTTATACCAT 107854
Score = 111 bits (122), Expect = 2e-19
Identities = 124/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| |||||||| ||||| | || || || || || || || || || ||
Sbjct 127729 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGATG 127788
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||||||||| || | ||||| |||| || ||| |||| || || ||||||||||||
Sbjct 127789 GCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTAAT 127848
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | |||||| || || | || | ||||| || ||||||||||
Sbjct 127849 TCCACAGTAGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 127894
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
||| || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||
Sbjct 123287 AGTGCCAGCATTGAAGAGGGTGGGAGAAGCATGGGTAAACCACTTCTCAGAAAGAAGGTT 123346
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
||| ||||||||| | || || ||||| || ||||| || |||| || | ||||||
Sbjct 123347 GTAAGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAA 123406
Query 77113 CATATGCTGAGGTC 77126
||||||||| ||||
Sbjct 123407 CATATGCTGTGGTC 123420
>seq6502
Length=3845251
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|| ||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| |||
Sbjct 1107977 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 1108036
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| ||||||||||| || ||||| || || || || ||
Sbjct 1108037 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 1108096
Query 46774 ACAA 46777
||||
Sbjct 1108097 ACAA 1108100
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || || || || | |||||||||||||| ||||| |||||||| || ||
Sbjct 1110090 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1110149
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|| || || || || ||||| | ||||| |||||||| || |||
Sbjct 1110150 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 1110195
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| || ||||||||||| || || ||||| ||||| |||||||| | ||| |||||| |
Sbjct 1111019 TACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATTTGCCAAATATCATG 1111078
Query 47187 ATATTGGATCGGAAAAATAACAAA 47210
||||| ||| ||||| || |||||
Sbjct 1111079 ATATTCGATAGGAAAGATGACAAA 1111102
>seq4475
Length=11054148
Score = 107 bits (118), Expect = 3e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| |||||||| || || | ||| |
Sbjct 3068325 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 3068384
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| |||||||||||||| || ||||| || || ||||| || ||||| ||||| || || |
Sbjct 3068385 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3068444
Query 46772 CGAC 46775
| ||
Sbjct 3068445 CCAC 3068448
Score = 87.8 bits (96), Expect = 3e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| |
Sbjct 3076577 TACCTCTTCTGCTGTCCAGAAGGAGGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 3076636
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|| ||||| ||||| || |||||||
Sbjct 3076637 GTACTGGATTGGAAAGATGACAAATC 3076662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712618436385600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |