Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq459 132 1e-25 seq8041 131 4e-25 seq3552 98.7 2e-15 >seq459 Length=3563100 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || || || |||||||| |||||||||||||| | | ||| Sbjct 2214340 CCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 2214281 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| |||||||||||||| | | ||| || Sbjct 2214280 GCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCC 2214221 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||||| || || || || || ||| |||| | | |||| ||| ||| || || Sbjct 2214220 CTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 2214164 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || || ||||||||||||| |||||| Sbjct 2214163 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2214119 Score = 129 bits (142), Expect = 1e-24 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || |||||||||||||| | | ||| | |||||| Sbjct 2213874 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2213815 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | ||| || ||||| || Sbjct 2213814 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 2213755 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 2213754 TGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 2213698 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| | ||||||||||||| ||||||||| Sbjct 2213697 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTT 2213660 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || |||||||||||||| | | ||| | |||||| Sbjct 2214102 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 2214043 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | ||| |||||||| || Sbjct 2214042 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 2213983 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| | ||| || || || || || || Sbjct 2213982 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACCTCCAGGGTGATGGTC 2213923 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 2213922 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2213891 >seq8041 Length=9355897 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || |||||||| ||||||||||| || | | || Sbjct 8398977 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 8399036 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 8399037 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 8399096 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 8399097 TCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 8399153 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| | ||||||||||||| |||||| Sbjct 8399154 AGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399197 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || |||||||| ||||||||||| || | | || Sbjct 8399205 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 8399264 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 8399265 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 8399324 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 8399325 TCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 8399381 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| | ||||||||||||| |||||| Sbjct 8399382 AGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399425 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || |||||||| ||||||||||| || | | || Sbjct 8399433 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 8399492 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 8399493 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 8399552 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 8399553 TCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 8399609 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| | ||||||||||||| |||||| Sbjct 8399610 AGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399653 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || |||||||| ||||||||||| || | | || Sbjct 8399661 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTG 8399720 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 8399721 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 8399780 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 8399781 TCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 8399837 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| | ||||||||||||| |||||| Sbjct 8399838 AGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8399881 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || ||||| || ||||||||||| || | | || Sbjct 8398749 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 8398808 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 8398809 CGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 8398868 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 8398869 TCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 8398925 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| | ||||||||||||| |||||| Sbjct 8398926 AGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8398969 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| || || || ||||||||||| || | | || | ||||||| Sbjct 8398530 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 8398589 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || ||||| | |||||||||||| | | ||| || ||||| ||| Sbjct 8398590 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 8398649 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| || || || || || Sbjct 8398650 TGGATCTTCGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 8398706 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| | ||||||||||||| |||||| Sbjct 8398707 GTCTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 8398741 >seq3552 Length=199577 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| || || ||||| || | | ||| | ||||| || | Sbjct 80759 CAAG-TGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCCA 80817 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| | || || || || ||||||||| | | ||| || ||||| ||||| | Sbjct 80818 GCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGA 80877 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 |||| ||||||| |||| | |||| ||| ||| || ||||| || || || | Sbjct 80878 TTTTAGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCT 80934 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| | || |||||||| ||||||||||| Sbjct 80935 TGCCCATCAGGGTCTTCACAAAGACCTGCAT 80965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153296657070305