Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq8041 161 7e-35 seq459 141 7e-29 >seq8041 Length=9355897 Score = 161 bits (178), Expect = 7e-35 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||| || | || |||||||| || ||| |||||| ||||||||||| || Sbjct 8398739 CATGCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 8398798 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| ||||||||||||||||| | |||||| |||| Sbjct 8398799 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGG 8398858 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || |||||| || | | |||| | |||||||| || | Sbjct 8398859 GGGGATGCCCTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCACTGGGCT 8398917 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| ||||| | ||||||||||||||| |||||| Sbjct 8398918 CCACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8398970 Score = 156 bits (172), Expect = 3e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||| || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 8398967 CATGCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 8399026 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| ||||||||||||||||| | |||||| |||| Sbjct 8399027 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGG 8399086 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || |||||| || | | |||| | |||||||| || | Sbjct 8399087 GGGGATGCCCTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCACTGGGCT 8399145 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| ||||| | ||||||||||||||| |||||| Sbjct 8399146 CCACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8399198 Score = 156 bits (172), Expect = 3e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||| || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 8399195 CATGCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 8399254 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| ||||||||||||||||| | |||||| |||| Sbjct 8399255 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGG 8399314 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || |||||| || | | |||| | |||||||| || | Sbjct 8399315 GGGGATGCCCTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCACTGGGCT 8399373 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| ||||| | ||||||||||||||| |||||| Sbjct 8399374 CCACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8399426 Score = 156 bits (172), Expect = 3e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||| || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 8399423 CATGCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 8399482 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| ||||||||||||||||| | |||||| |||| Sbjct 8399483 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGG 8399542 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || |||||| || | | |||| | |||||||| || | Sbjct 8399543 GGGGATGCCCTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCACTGGGCT 8399601 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| ||||| | ||||||||||||||| |||||| Sbjct 8399602 CCACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8399654 Score = 156 bits (172), Expect = 3e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| |||||||| || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 8399651 CATGCCCCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 8399710 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || |||||||| ||||||||||||||||| | |||||| |||| Sbjct 8399711 AGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGG 8399770 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || |||||| || | | |||| | |||||||| || | Sbjct 8399771 GGGGATGCCCTCCTTGTCTTGGATCTTC-GCCTTGACGTTCTCGATGGTGTCACTGGGCT 8399829 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| ||||| | ||||||||||||||| |||||| Sbjct 8399830 CCACCTCCAGGGTGATGGTCTTACCCGTCAAGGTCTTCACGAAGATCTGCATG 8399882 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| ||||| ||||||||||| || | || |||| | || ||| Sbjct 8398533 ACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 8398592 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| ||||| ||||||||||| | |||||| |||| || | || ||||| || Sbjct 8398593 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 8398652 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| || | | |||| | |||||||| || |||||||||| || || ||||| Sbjct 8398653 ATCTTC-GCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 8398711 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | ||||||||||||||| |||||| Sbjct 8398712 ACCCGTCAAGGTCTTCACGAAGATCTGCATG 8398742 >seq459 Length=3563100 Score = 141 bits (156), Expect = 7e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || || |||||| |||||||||||||| Sbjct 2214121 CATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 2214062 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || || ||||| | | |||||| || | Sbjct 2214061 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGG 2214002 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| ||||| |||| | ||||||||| | | Sbjct 2214001 AGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCGCTAGGCT 2213943 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 2213942 CCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2213891 Score = 132 bits (146), Expect = 3e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || || |||||| |||||||||||||| Sbjct 2213893 CATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATC 2213834 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || || ||||| | | |||||| || | Sbjct 2213833 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGG 2213774 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| ||||| ||||| | | |||||||| || || Sbjct 2213773 AGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTC 2213714 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || ||||| ||||| | ||||||||||||||| ||||| Sbjct 2213713 CACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2213663 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || || ||| || |||||||||||||| | Sbjct 2214345 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 2214286 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || || ||||| | | |||||| || | ||| Sbjct 2214285 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 2214226 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||||| | | |||||||| || |||||| Sbjct 2214225 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 2214166 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 2214165 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2214119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359834845335735