Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1689 156 6e-33
seq4562 87.8 3e-12
>seq1689
Length=20430167
Score = 156 bits (172), Expect = 6e-33
Identities = 169/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| |||| ||| |||||||||||| || || || || ||||| |||||
Sbjct 184658 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTAAGCACATCACACACT 184599
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
|| |||||||||| |||||||| |||||||||||||| || ||||| ||||| |||||
Sbjct 184598 CTATTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 184539
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
||| || || ||||| | ||| || ||| || || | ||||| |||||||| |
Sbjct 184538 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTTG 184479
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479
||||| |||||||| | || ||||||| || || ||||
Sbjct 184478 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAAT 184435
Score = 120 bits (132), Expect = 4e-22
Identities = 209/304 (69%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| | || || ||||| || || || || | |||| ||||||||||| |
Sbjct 186143 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACATTATTGCAGATGAGAGACTGAATTG 186084
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| ||| || || || ||||| || || ||||||||||||||||||
Sbjct 186083 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGCTTCCAGTACT 186024
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || || || || |||| || ||||| | |||||| || || || || |
Sbjct 186023 CAGGAGAACATATAGGATTACCCATCAGTCCTTTCAAGGAGAATGGTGCTCCAGCTTCTA 185964
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| |||| || |||||||| | ||||| |||||||| |||| | | | ||||
Sbjct 185963 CCATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACA 185904
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
| |||| | || | ||| || || || || | || ||||| || ||||| ||||
Sbjct 185903 GTTCCATGACATCAATGTCACCATAGAGAGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 185844
Query 8583 CTGT 8586
||||
Sbjct 185843 CTGT 185840
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 183563 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 183504
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| | || || |||||||| ||
Sbjct 183503 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTACCCTGGGGGTC 183444
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| |||| | || | ||||| |||||||||||| | | | ||| || ||||
Sbjct 183443 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 183384
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
| | | |||| || |||||
Sbjct 183383 TTTCCTCCCTGAAAAATGAGAA 183362
Score = 98.7 bits (108), Expect = 1e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || ||||| || |||| || || ||||| ||| ||||
Sbjct 183038 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 182979
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||||||||| || || |||||||||||| || | |||| || ||||| |
Sbjct 182978 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTGTAAGTT 182919
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| ||||||||||||| || ||||| ||||
Sbjct 182918 GGTGGGCTGTCAATCAGATGTGATCTTGCTGA 182887
>seq4562
Length=4329500
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/141 (74%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704
|| || ||||| || |||| | | || |||||| | || || || |||| | |||
Sbjct 3802072 GTACTCACCCCGTGGCCCAATGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 3802129
Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||
Sbjct 3802130 TGAAGAACTGGTGAGTGAAGTGTTGCGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 3802189
Query 9765 GATCGGGAGTGAAGGTCCTCC 9785
| || || |||| ||||||
Sbjct 3802190 GGTCAGGTATGAACTTCCTCC 3802210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716559089163200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |