Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq459 154 4e-32 seq8041 145 2e-29 seq4088 105 2e-17 seq2669 96.9 8e-15 >seq459 Length=3563100 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || || Sbjct 2213894 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCTAGCG 2213951 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| ||||| || ||||| |||||||| ||||||| Sbjct 2213952 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAGC 2214011 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 2214012 AGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 2214071 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 2214072 TCCAGAAGGAGTCGACCCTGCACCTGGT 2214099 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 2214122 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 2214179 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| ||||| || || || |||||||| ||||||| Sbjct 2214180 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGC 2214239 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 2214240 AGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 2214299 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 2214300 TCCAGAAAGAGTCGACCCTGCACCTGGT 2214327 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || | || || || || |||||||| |||| Sbjct 2213655 AGGTCAAAATGC---AGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGG 2213711 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| ||||| || || || || Sbjct 2213712 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 2213769 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 |||||| |||||||| | || |||||||| || || ||||| |||||||| | ||||| Sbjct 2213770 CCCTCCTGACCAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 2213829 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| || || || || ||||| || || Sbjct 2213830 TTCTGATTACAACATCCAGAAGGAGTCGACCCTGCACCTGGT 2213871 >seq8041 Length=9355897 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 8399194 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 8399137 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 8399136 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 8399077 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 8399076 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 8399017 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | |||||| Sbjct 8399016 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 8398976 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 8399422 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 8399365 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 8399364 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 8399305 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 8399304 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 8399245 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | |||||| Sbjct 8399244 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 8399204 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 8399650 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 8399593 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 8399592 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 8399533 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 8399532 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 8399473 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | |||||| Sbjct 8399472 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 8399432 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 8399878 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 8399821 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 8399820 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 8399761 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 8399760 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 8399701 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | |||||| Sbjct 8399700 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 8399660 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 8398966 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 8398909 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 8398908 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 8398849 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || | || || ||| Sbjct 8398848 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 8398789 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 8398788 TCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGA 8398748 Score = 134 bits (148), Expect = 3e-26 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 8398738 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 8398681 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 8398680 ACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGC 8398621 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 8398620 AGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 8398561 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || ||||| |||| Sbjct 8398560 TCCAGAAGGAATCCACTCTGCA-CTTG 8398535 >seq4088 Length=12000580 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || ||||| || || |||||||||||||| || | | ||| Sbjct 9606613 CAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACTGAC 9606554 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| |||| |||||| | || | ||||| || || ||||| || |||||||| Sbjct 9606553 ACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACCAGCAG 9606494 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || ||| | || |||||||| || ||||| | ||||| | ||||| | || Sbjct 9606493 CATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACGATGTT 9606434 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || || ||||| Sbjct 9606433 CAGAAAGAGTCCACCTTGCAT 9606413 >seq2669 Length=6508339 Score = 96.9 bits (106), Expect = 8e-15 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 4561894 CAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 4561951 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| ||||| |||||| || || |||||||| || || ||||| || || |||| Sbjct 4561952 ACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCAGC 4562011 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 | | || || || | || |||||||| || ||||| | ||||| Sbjct 4562012 AGCATCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCT 4562057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203184384413270