Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq529 100 3e-16
seq317 93.3 4e-14
seq279 93.3 4e-14
>seq529
Length=2371606
Score = 100 bits (110), Expect = 3e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 124440 TGGACGTTGTAAAAATAGGCAAGGATCCCAGTAAGATACCCGATTGGTTGATCGTTAACA 124499
||||| | || || || ||||||||||||| ||||||||| ||| ||| | || |
Sbjct 2371595 TGGACATGGTGAAGATCAGCAAGGATCCCAGCAAGATACCCAGCTGGCTGAAAATCAATA 2371536
Query 124500 AGACGTACTATCCGGATTTCGTCGTAAAAGATCCTAAGAAAGCTCCCGTGTGGGAGATAT 124559
||| ||||| || |||||| |||| ||| || ||||||||| |||||||||||||
Sbjct 2371535 AGATCTACTACCCTGATTTCATCGTCCCAGACCCAAAGAAAGCTGCCGTGTGGGAGATCA 2371476
Query 124560 CAGGAGCCAGTTTCTCATCATCTCCCAATCATACGGCTAACGGTATATCGATTCGATTTC 124619
|||| || ||||| |||| ||| || || |||| || || || ||||| |
Sbjct 2371475 CAGGGGCTGAATTCTCCAAATCTGAGGCTCACACAGCCGACGGGATCTCCATCCGATTCC 2371416
Query 124620 CCAGATGTACCAAGATACGAGACGATAA 124647
| | || ||| || || || |||||
Sbjct 2371415 CTCGCTGCACCCGAATCCGTGATGATAA 2371388
>seq317
Length=3209840
Score = 93.3 bits (102), Expect = 4e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
||||||||||| |||||||| |||||||| || | || ||||| |||||| |||||
Sbjct 2108760 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 2108701
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| | ||||| || || |||||||| || || || || | ||||| ||
Sbjct 2108700 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 2108642
>seq279
Length=9007507
Score = 93.3 bits (102), Expect = 4e-14
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| ||||||||||| | || ||||| |||| ||||
Sbjct 4426777 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 4426718
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
| | ||| ||||| |||||||| || || || ||||| || || || |||| ||||| |
Sbjct 4426717 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4426658
Query 16344 C 16344
|
Sbjct 4426657 C 4426657
Score = 84.2 bits (92), Expect = 2e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984
||| ||||| || ||||| || ||||| ||||||||||| || |||||||||||||||||
Sbjct 4436144 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 4436085
Query 15985 GGGATT 15990
||||||
Sbjct 4436084 GGGATT 4436079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511206171234360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |