Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq529 100 3e-16 seq317 93.3 4e-14 seq279 93.3 4e-14 >seq529 Length=2371606 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 124440 TGGACGTTGTAAAAATAGGCAAGGATCCCAGTAAGATACCCGATTGGTTGATCGTTAACA 124499 ||||| | || || || ||||||||||||| ||||||||| ||| ||| | || | Sbjct 2371595 TGGACATGGTGAAGATCAGCAAGGATCCCAGCAAGATACCCAGCTGGCTGAAAATCAATA 2371536 Query 124500 AGACGTACTATCCGGATTTCGTCGTAAAAGATCCTAAGAAAGCTCCCGTGTGGGAGATAT 124559 ||| ||||| || |||||| |||| ||| || ||||||||| ||||||||||||| Sbjct 2371535 AGATCTACTACCCTGATTTCATCGTCCCAGACCCAAAGAAAGCTGCCGTGTGGGAGATCA 2371476 Query 124560 CAGGAGCCAGTTTCTCATCATCTCCCAATCATACGGCTAACGGTATATCGATTCGATTTC 124619 |||| || ||||| |||| ||| || || |||| || || || ||||| | Sbjct 2371475 CAGGGGCTGAATTCTCCAAATCTGAGGCTCACACAGCCGACGGGATCTCCATCCGATTCC 2371416 Query 124620 CCAGATGTACCAAGATACGAGACGATAA 124647 | | || ||| || || || ||||| Sbjct 2371415 CTCGCTGCACCCGAATCCGTGATGATAA 2371388 >seq317 Length=3209840 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| |||||||| |||||||| || | || ||||| |||||| ||||| Sbjct 2108760 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 2108701 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 2108700 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 2108642 >seq279 Length=9007507 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| |||| Sbjct 4426777 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 4426718 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 | | ||| ||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 4426717 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4426658 Query 16344 C 16344 | Sbjct 4426657 C 4426657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 4436144 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 4436085 Query 15985 GGGATT 15990 |||||| Sbjct 4436084 GGGATT 4436079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511206171234360