Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq251 187 2e-42 >seq251 Length=3596318 Score = 187 bits (206), Expect = 2e-42 Identities = 386/573 (67%), Gaps = 6/573 (1%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || ||||| | ||| |||| |||||||| |||||||| || ||||| |||| Sbjct 284727 GGAGATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATACGAAGAT 284668 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 | ||| | |||| | ||||| | || || ||||| | || | || ||||| Sbjct 284667 ACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGACACAATC 284608 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 ||||| ||||| | | || |||| || || | | ||||||||||| | |||| Sbjct 284607 AAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACACCTCCCG 284548 Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028 | | || || || || || || | | || ||||| ||||| | |||||||| | Sbjct 284547 CTCACGGCCCTCCCGCCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCTG 284488 Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 |||||||| | || || | || || || |||||||| || || || |||||||| || Sbjct 284487 TCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATCGCC 284428 Query 19089 GGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTA 19148 | || | || || |||||||| | || || | ||||| || || | || || | Sbjct 284427 AGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGACCTT 284368 Query 19149 ATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAG 19208 | || || |||| |||||||| |||||| ||||||| | || | | ||| ||||| Sbjct 284367 GTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCCACTGAAAATGCAG 284308 Query 19209 CTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATA 19268 || | ||| |||| ||||| || || ||||| ||||||| || || | | Sbjct 284307 CTTCCGCGAGAACCAAGGCCTTTCCCGAAGCTCAAAATGCTTCGAAAAGT---TGAGAAA 284251 Query 19269 A---ACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTA 19325 | | | ||| || || || |||||| |||| || || ||||| || || | | Sbjct 284250 ACTGATGGCTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCATCCGACTATT 284191 Query 19326 AAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 ||||||||||||||| ||||| | ||||||| Sbjct 284190 AAAATGGAAATGGCTGTTTAAAGTGCTTTTAAA 284158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399345403528785