Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq130 351 7e-92
seq2246 275 5e-69
seq251 226 2e-54
seq807 161 7e-35
seq91 125 5e-24
>seq130
Length=18515582
Score = 351 bits (388), Expect = 7e-92
Identities = 429/581 (74%), Gaps = 6/581 (1%)
Strand=Plus/Minus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || |||||| ||||| |||||||||||||||||||||||||| | |||
Sbjct 5228491 AAAACACTTTCACATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTT 5228432
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
| || || |||| ||| |||||| |||||||||| | |||||| ||||| || | |
Sbjct 5228431 TTCTCCTGGACATCAGAGGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCCAAA 5228372
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCA--CAA-AC 4131
||| |||| ||||||| || ||| ||||| || ||||||||||| ||| || |
Sbjct 5228371 TCAGTTTCTAGAAAAAATATGCCACTCTCAAATTCCTGCATGATCCTTGTCCTGCAGGAT 5228312
Query 4132 AGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATC 4191
| | |||||| | ||| | ||| ||||| ||| ||| || |||||||| | ||||
Sbjct 5228311 AATCTAAGATGACCTGGCTTGTCCATGGCTTCCTTAAACAGAG--CTACCTCCCACTATC 5228254
Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251
|| ||||| ||| ||| ||||| ||||||||| || || |||||||||| ||||||||
Sbjct 5228253 CAAACCATATCTGCTTAATTTGTTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCC 5228194
Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACA 4311
||| || | ||||||||||||| |||||||| ||| | ||||| | || |||||
Sbjct 5228193 GGACTTTTGTCAAAAAAATGAGCTCC-TGTGGAAGTTCCCTGAGTTCTCTACTTAGAACT 5228135
Query 4312 ACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTA 4371
| | |||||||| | ||||||| | || |||||| || | |||||||| |||||| ||
Sbjct 5228134 AAACTAATTCTGTCCTTTAAAGTTCAGTCCTTCTCTTGAGTGGAGAACCAGGTCTTTCTA 5228075
Query 4372 CCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAA 4431
||||||||||| ||| ||| ||| || | | |||| | || ||||||||||||||
Sbjct 5228074 CCCATAATCACCAAACACTGCTTACCTTCTGCTAAAGAGGCTGTGGTCATTCTTTGGAAG 5228015
Query 4432 TGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATG 4491
| || || |||||| | | ||||| |||| || || | ||||| || |||||
Sbjct 5228014 TACTTGAATTCATTCCTGACCGGGGGCCAGGGCAGGTCCCCATTCTTGCCCATATCCATG 5227955
Query 4492 TTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532
|| || | ||||| | ||||||| || | |||||||
Sbjct 5227954 TTCTGGGACACAGCGATGATGCAGTCGAGCGGACGAACCAT 5227914
>seq2246
Length=1060343
Score = 275 bits (304), Expect = 5e-69
Identities = 284/367 (77%), Gaps = 6/367 (2%)
Strand=Plus/Plus
Query 4156 ATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCT 4215
|| ||||| ||||| |||||||| |||||| | |||| || ||||| ||||||| || |
Sbjct 252736 ATGGCTTCCTTATAAACAGAACTGCCTCCACTG-TCCAAACTATGTCCACTTTATCTGTT 252794
Query 4216 AATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCT 4275
|||||| | || | |||||||||||| |||||||| | ||| | || | ||||||| ||
Sbjct 252795 AATTCTAGTTGCTAGGTAAGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGATCT 252854
Query 4276 CTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG-CCTTTTAAAGG 4334
| |||||| | ||||| | ||| | |||||||| | |||||||||| |||||||||||
Sbjct 252855 CCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAGG 252914
Query 4335 CCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394
|| |||||||| |||| |||||||| |||||| |||| |||||||| |||||||||||
Sbjct 252915 TCGATTCTTCTCTAGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTTT 252974
Query 4395 ATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCT 4454
| || ||| ||||| | || |||||||||| ||||| ||||| |||||| | |||
Sbjct 252975 ACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCCTGAGTGG 253034
Query 4455 TGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCCATGTTTTGAGCTACAGCAACAATG 4512
|||| ||| || || ||| ||||| || |||||||| || | | | ||| ||
Sbjct 253035 GTGCCAGTGCAGGT--CCCTGTTCTTGCCGATACCCATGTTCTGGGACATGGTGACAGTG 253092
Query 4513 CAGTTTA 4519
|||||||
Sbjct 253093 CAGTTTA 253099
>seq251
Length=3596318
Score = 226 bits (250), Expect = 2e-54
Identities = 497/739 (67%), Gaps = 7/739 (1%)
Strand=Plus/Plus
Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGT 101591
|||||||||||| | ||||||||| | || || || || ||| ||| ||| | || ||
Sbjct 284170 TTAAACAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGCCTTC-AATCTGAAAGT 284228
Query 101592 CATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651
| || || || ||| ||||| | ||| |||| | | | | || | || || |
Sbjct 284229 CTTCAGCCTTGAAGCCATCAGTTTTCTCAACTTTTCGAAGCATTTTGAGCTTCGGGAAAG 284288
Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711
| || || ||||| | ||||||||| || | ||| |||||| | || ||||| |
Sbjct 284289 GCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTG 284348
Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771
||||||| | ||| || | || || || ||| || |||| || |||||||||
Sbjct 284349 CATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGT 284408
Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831
| || | ||||| ||||| || ||||| || ||||| || | ||||| || |||| |
Sbjct 284409 AGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACC 284468
Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGA 101890
| |||||| || ||||| |||| || | ||| || || || || | | ||||
Sbjct 284469 GCTCATACAGCTGGCAGGACAGCTCACCGTTCACC-ACGTAGAACTGGCAAAGGGCATGG 284527
Query 101891 CAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTT 101950
|| ||||| | || | || | || | |||||| |||||||| | || |||
Sbjct 284528 CAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGATGATTCTT 284587
Query 101951 CTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCT 102010
|| || ||||||| ||||| || || ||| ||| || | | |||||| |||||||
Sbjct 284588 CTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTG 284647
Query 102011 CCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070
||| |||||| | | ||| ||||| || || ||||||||||||||||| |
Sbjct 284648 CCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGG 284707
Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130
|| || || || ||||||||||| |||| | || || || | || || | |
Sbjct 284708 TATACTGGGCCTAGATCTCCTTC---TCTGGTGGAGAATCCCAGGCTGTCCAAGACGCCT 284764
Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190
| || ||||| || ||||| || | ||| || | || ||||| || || ||
Sbjct 284765 CGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTG 284824
Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250
||||| |||||||||||| || ||| || | |||||| |||| || || | || ||
Sbjct 284825 GATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTT 284884
Query 102251 GTTAAAAGTGGAAATTCAT 102269
|| | |||||||||||||
Sbjct 284885 GTGAGCAGTGGAAATTCAT 284903
>seq807
Length=2123638
Score = 161 bits (178), Expect = 7e-35
Identities = 181/242 (75%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990
|||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| |||
Sbjct 1102244 AGCTCTTAAGCCACATGGCGTACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 1102185
Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050
|||||||| |||| || || | |||||| | ||| || | |||| || || |||
Sbjct 1102184 ATCTTCTCCAGCCGGAAGGAGTGTGGGCAGTGCTGAGGCTCCCGTCGCAGGACCAGGATC 1102125
Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110
||||| ||||| ||||| ||||||||||||| ||| || ||||| | ||| || |||||
Sbjct 1102124 TCTTGCTGGATGGGGACGGAGTTCATGTGGTGGTCGACCTTCCCCTTAGCGTTGACACAG 1102065
Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170
|| ||| || ||||| || ||||| ||||||||||| || | || | || || |||
Sbjct 1102064 CCCGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCGCTCGGGGTCCTCGTTG 1102005
Query 27171 CG 27172
||
Sbjct 1102004 CG 1102003
>seq91
Length=16929213
Score = 125 bits (138), Expect = 5e-24
Identities = 99/119 (83%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| |||||||| |||||||||| |||||||||
Sbjct 15937487 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 15937546
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283
|| || |||||||||| |||||||| | ||| || || | ||||||||||| |||||
Sbjct 15937547 TGCTCAATAAGTTTTAAGGCATCATCCAGACTGTTGGCAAGAAAATGAGCTCCTTGTGG 15937605
Score = 116 bits (128), Expect = 3e-21
Identities = 91/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| ||
Sbjct 15942613 CTTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 15942672
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| |||||| ||||||||||||| ||||| || ||| ||
Sbjct 15942673 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGCTTACCT 15942721
Score = 98.7 bits (108), Expect = 7e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||| || | ||||| |||||||||||| |||||| ||||| || |||||
Sbjct 15935228 AAGTTTATATTTTTCCAAATCAATTTCTGGAAAAAACATGTCACTCTCAAACTCCTGCAT 15935287
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175
|||||| |||||||| | | |||||| || ||| | ||||||||| || | | |||
Sbjct 15935288 GATCCTTGTCACAAATAATCTAAGATGGCCTGGCTTGTCCATAGCTTCCTTTGAAATAGA 15935347
Query 4176 AC 4177
||
Sbjct 15935348 AC 15935349
Score = 95.1 bits (104), Expect = 9e-15
Identities = 77/93 (83%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| ||| || ||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct 15927603 AAAAAACACTT---TTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 15927659
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047
|| || || |||| |||| |||||| |||||||
Sbjct 15927660 TCCTCCTGGACATCAGAAGGAACACCTGGATAT 15927692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361107789256823
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