Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq130 351 7e-92 seq2246 275 5e-69 seq251 226 2e-54 seq807 161 7e-35 seq91 125 5e-24 >seq130 Length=18515582 Score = 351 bits (388), Expect = 7e-92 Identities = 429/581 (74%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||| |||||||||||||||||||||||||| | ||| Sbjct 5228491 AAAACACTTTCACATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTT 5228432 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 | || || |||| ||| |||||| |||||||||| | |||||| ||||| || | | Sbjct 5228431 TTCTCCTGGACATCAGAGGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCCAAA 5228372 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCA--CAA-AC 4131 ||| |||| ||||||| || ||| ||||| || ||||||||||| ||| || | Sbjct 5228371 TCAGTTTCTAGAAAAAATATGCCACTCTCAAATTCCTGCATGATCCTTGTCCTGCAGGAT 5228312 Query 4132 AGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATC 4191 | | |||||| | ||| | ||| ||||| ||| ||| || |||||||| | |||| Sbjct 5228311 AATCTAAGATGACCTGGCTTGTCCATGGCTTCCTTAAACAGAG--CTACCTCCCACTATC 5228254 Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251 || ||||| ||| ||| ||||| ||||||||| || || |||||||||| |||||||| Sbjct 5228253 CAAACCATATCTGCTTAATTTGTTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCC 5228194 Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACA 4311 ||| || | ||||||||||||| |||||||| ||| | ||||| | || ||||| Sbjct 5228193 GGACTTTTGTCAAAAAAATGAGCTCC-TGTGGAAGTTCCCTGAGTTCTCTACTTAGAACT 5228135 Query 4312 ACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTA 4371 | | |||||||| | ||||||| | || |||||| || | |||||||| |||||| || Sbjct 5228134 AAACTAATTCTGTCCTTTAAAGTTCAGTCCTTCTCTTGAGTGGAGAACCAGGTCTTTCTA 5228075 Query 4372 CCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAA 4431 ||||||||||| ||| ||| ||| || | | |||| | || |||||||||||||| Sbjct 5228074 CCCATAATCACCAAACACTGCTTACCTTCTGCTAAAGAGGCTGTGGTCATTCTTTGGAAG 5228015 Query 4432 TGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATG 4491 | || || |||||| | | ||||| |||| || || | ||||| || ||||| Sbjct 5228014 TACTTGAATTCATTCCTGACCGGGGGCCAGGGCAGGTCCCCATTCTTGCCCATATCCATG 5227955 Query 4492 TTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || | ||||| | ||||||| || | ||||||| Sbjct 5227954 TTCTGGGACACAGCGATGATGCAGTCGAGCGGACGAACCAT 5227914 >seq2246 Length=1060343 Score = 275 bits (304), Expect = 5e-69 Identities = 284/367 (77%), Gaps = 6/367 (2%) Strand=Plus/Plus Query 4156 ATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCT 4215 || ||||| ||||| |||||||| |||||| | |||| || ||||| ||||||| || | Sbjct 252736 ATGGCTTCCTTATAAACAGAACTGCCTCCACTG-TCCAAACTATGTCCACTTTATCTGTT 252794 Query 4216 AATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCT 4275 |||||| | || | |||||||||||| |||||||| | ||| | || | ||||||| || Sbjct 252795 AATTCTAGTTGCTAGGTAAGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGATCT 252854 Query 4276 CTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG-CCTTTTAAAGG 4334 | |||||| | ||||| | ||| | |||||||| | |||||||||| ||||||||||| Sbjct 252855 CCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAGG 252914 Query 4335 CCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 || |||||||| |||| |||||||| |||||| |||| |||||||| ||||||||||| Sbjct 252915 TCGATTCTTCTCTAGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTTT 252974 Query 4395 ATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCT 4454 | || ||| ||||| | || |||||||||| ||||| ||||| |||||| | ||| Sbjct 252975 ACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCCTGAGTGG 253034 Query 4455 TGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCCATGTTTTGAGCTACAGCAACAATG 4512 |||| ||| || || ||| ||||| || |||||||| || | | | ||| || Sbjct 253035 GTGCCAGTGCAGGT--CCCTGTTCTTGCCGATACCCATGTTCTGGGACATGGTGACAGTG 253092 Query 4513 CAGTTTA 4519 ||||||| Sbjct 253093 CAGTTTA 253099 >seq251 Length=3596318 Score = 226 bits (250), Expect = 2e-54 Identities = 497/739 (67%), Gaps = 7/739 (1%) Strand=Plus/Plus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGT 101591 |||||||||||| | ||||||||| | || || || || ||| ||| ||| | || || Sbjct 284170 TTAAACAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGCCTTC-AATCTGAAAGT 284228 Query 101592 CATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651 | || || || ||| ||||| | ||| |||| | | | | || | || || | Sbjct 284229 CTTCAGCCTTGAAGCCATCAGTTTTCTCAACTTTTCGAAGCATTTTGAGCTTCGGGAAAG 284288 Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711 | || || ||||| | ||||||||| || | ||| |||||| | || ||||| | Sbjct 284289 GCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTG 284348 Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771 ||||||| | ||| || | || || || ||| || |||| || ||||||||| Sbjct 284349 CATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGT 284408 Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 | || | ||||| ||||| || ||||| || ||||| || | ||||| || |||| | Sbjct 284409 AGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACC 284468 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGA 101890 | |||||| || ||||| |||| || | ||| || || || || | | |||| Sbjct 284469 GCTCATACAGCTGGCAGGACAGCTCACCGTTCACC-ACGTAGAACTGGCAAAGGGCATGG 284527 Query 101891 CAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTT 101950 || ||||| | || | || | || | |||||| |||||||| | || ||| Sbjct 284528 CAGGGCGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGATGATTCTT 284587 Query 101951 CTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCT 102010 || || ||||||| ||||| || || ||| ||| || | | |||||| ||||||| Sbjct 284588 CTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTG 284647 Query 102011 CCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070 ||| |||||| | | ||| ||||| || || ||||||||||||||||| | Sbjct 284648 CCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGG 284707 Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130 || || || || ||||||||||| |||| | || || || | || || | | Sbjct 284708 TATACTGGGCCTAGATCTCCTTC---TCTGGTGGAGAATCCCAGGCTGTCCAAGACGCCT 284764 Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190 | || ||||| || ||||| || | ||| || | || ||||| || || || Sbjct 284765 CGGGACCCATTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTG 284824 Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250 ||||| |||||||||||| || ||| || | |||||| |||| || || | || || Sbjct 284825 GATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTT 284884 Query 102251 GTTAAAAGTGGAAATTCAT 102269 || | ||||||||||||| Sbjct 284885 GTGAGCAGTGGAAATTCAT 284903 >seq807 Length=2123638 Score = 161 bits (178), Expect = 7e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| ||| Sbjct 1102244 AGCTCTTAAGCCACATGGCGTACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 1102185 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | ||| || | |||| || || ||| Sbjct 1102184 ATCTTCTCCAGCCGGAAGGAGTGTGGGCAGTGCTGAGGCTCCCGTCGCAGGACCAGGATC 1102125 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| ||||||||||||| ||| || ||||| | ||| || ||||| Sbjct 1102124 TCTTGCTGGATGGGGACGGAGTTCATGTGGTGGTCGACCTTCCCCTTAGCGTTGACACAG 1102065 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || ||| || ||||| || ||||| ||||||||||| || | || | || || ||| Sbjct 1102064 CCCGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCGCTCGGGGTCCTCGTTG 1102005 Query 27171 CG 27172 || Sbjct 1102004 CG 1102003 >seq91 Length=16929213 Score = 125 bits (138), Expect = 5e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||||||| ||||||||| Sbjct 15937487 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 15937546 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || || |||||||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 15937547 TGCTCAATAAGTTTTAAGGCATCATCCAGACTGTTGGCAAGAAAATGAGCTCCTTGTGG 15937605 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 15942613 CTTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 15942672 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| ||||| || ||| || Sbjct 15942673 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGCTTACCT 15942721 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||||||||| |||||| ||||| || ||||| Sbjct 15935228 AAGTTTATATTTTTCCAAATCAATTTCTGGAAAAAACATGTCACTCTCAAACTCCTGCAT 15935287 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| | | |||||| || ||| | ||||||||| || | | ||| Sbjct 15935288 GATCCTTGTCACAAATAATCTAAGATGGCCTGGCTTGTCCATAGCTTCCTTTGAAATAGA 15935347 Query 4176 AC 4177 || Sbjct 15935348 AC 15935349 Score = 95.1 bits (104), Expect = 9e-15 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| ||| || ||||| ||||| |||||||||||||||||||||||||| | |||| Sbjct 15927603 AAAAAACACTT---TTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 15927659 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| |||| |||||| ||||||| Sbjct 15927660 TCCTCCTGGACATCAGAAGGAACACCTGGATAT 15927692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361107789256823