Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq428 320 2e-82
seq26 248 1e-60
seq310 170 2e-37
seq650 140 4e-28
seq28745 125 9e-24
seq846 125 9e-24
seq130 82.4 9e-11
>seq428
Length=1969329
Score = 320 bits (354), Expect = 2e-82
Identities = 357/473 (75%), Gaps = 9/473 (2%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||| |||||||| ||||||| | | |||||| | ||||| |||| |||||||||
Sbjct 243383 AGCAGGGTTTCGATGTCAGGCTCCATGTCGAGGGTCAGAAAGCGGCGGCTATACCTGCGC 243324
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAG-AACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175
|| |||| || || | ||| || | ||||||||||||||||||| || ||||||||
Sbjct 243323 ACAGGCGCACCATCTGGGCCCCCCCGGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCG 243264
Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235
||| ||||||||||||| |||| || ||||||| ||| ||| | | || ||| ||
Sbjct 243263 GCATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTGGTCCCT 243204
Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGAC 83295
|| | ||||||| ||| || || |||||||||||||| || ||| ||| |||| ||
Sbjct 243203 GGGAGTGGGCAGGGTCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTTTGAGCCGTCCAC 243144
Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA---GCCGTTCCCAGGACGGACGTG 83352
|||||| ||||| ||||||| ||||| |||||||| ||||| | || ||||| |
Sbjct 243143 CTCGCATTTCTCAAAGAGCACGAAGTTGGGCTCGAACCTGCCGT---CTGGTCGGACATA 243087
Query 83353 CTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACA 83412
||| ||| | | |||||| | |||| | ||| ||||| | || ||||||| ||
Sbjct 243086 CTTGAGGCAGTTTAGGATCTCCTCGTTCTTCGAGTTCTCCTGATACCCAGACTGGTTGCA 243027
Query 83413 CGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTG 83472
| || | || ||||| ||||| ||||| | || |||||||||||||||| ||||||||
Sbjct 243026 CAGGGAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGCGCCGCTGCAGCTTATTCATCTG 242967
Query 83473 AGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525
||||| |||||| |||| | |||| || ||||| |||||||| || |||
Sbjct 242966 GGTGTAGTCCCGGCCCGTTGTGCCTC--AGTGACGCCACGTTCTCAGTGCGCA 242916
>seq26
Length=2428533
Score = 248 bits (274), Expect = 1e-60
Identities = 257/337 (76%), Gaps = 0/337 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | | | |||| | ||||| ||||||||||||||
Sbjct 1671891 AGCAGGGCTTCGATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 1671832
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| || || | ||||||| |||||||||||||||||||| || |||||||||
Sbjct 1671831 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCGG 1671772
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| ||||||||||||| |||| || ||||||| ||| ||| | | |||||| ||
Sbjct 1671771 CATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTCGTCACTG 1671712
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| | ||||||||||| || || |||| ||||||||| || ||| ||| ||||| ||
Sbjct 1671711 GGAGTGGGCAGGGCCTCACGAAGAAAGGAGAAGAGCGGGTGCGCCTTTGAGCCGTTCACG 1671652
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|| || ||||| || ||||| ||||| |||||||| || || || ||||| | |||
Sbjct 1671651 TCACATTTCTCAAATAGCATGAAGTTGGGCTCGAACCCACCTCCTGGTCGGACATACTTG 1671592
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
||| | || |||||| | |||| ||||| ||||
Sbjct 1671591 AGGCAGTTCAGGATCTCCTCGTTCTTCGCGTTCTCCT 1671555
Score = 120 bits (132), Expect = 4e-22
Identities = 117/151 (77%), Gaps = 6/151 (4%)
Strand=Plus/Minus
Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507
|||||||||||||||| |||| ||| ||||| ||||||||||| | |||||||| ||||
Sbjct 1671291 GGCGCCGCTGCAGCTCATTCAGCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACG 1671232
Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTC 83567
| || ||||| ||||||| ||| |||||| | | |||| | |||||| || || || |
Sbjct 1671231 CCACATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACCGGCTCCCCGC 1671172
Query 83568 CGGTAATCGGGCGTGCTGAGAAGGCGTACAC 83598
|| ||||| || ||||||| ||| ||
Sbjct 1671171 CG------GGGCGCGCAGAGAAGGTGTATAC 1671147
>seq310
Length=8739377
Score = 170 bits (188), Expect = 2e-37
Identities = 368/542 (68%), Gaps = 19/542 (4%)
Strand=Plus/Minus
Query 83063 GCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGC 83122
|| || | ||| |||| | | ||| |||| | ||| |||||||||||||| ||||
Sbjct 2322079 GCTTCCAGGTCAGGCTTAAGGTCCATGGTCAGAAAGCTTCAGCTGTACCTGCGCATGGGC 2322020
Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182
|||||| || || |||||||||||||||||| || ||||| ||||||
Sbjct 2322019 ACGCCGTCCAGGCCTCCCGGGAACTTCTCGAAGTTCCAAGCGACGTCCTTGCGG------ 2321966
Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC 83242
| |||||| | || || ||| ||| ||| ||| || | | | || || ||||
Sbjct 2321965 --ATACCAGGAGACGAACTTGGGCTCGGTCATGAGGGTAGTGGCGACATCACTGGGCGTG 2321908
Query 83243 GGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCAC 83302
|||| ||||| || ||||||| |||||| || || ||| | | || || || ||||||
Sbjct 2321907 AGCAGAGCCTCGCGAAGGAAGGTGAAGAGTGGGTGCGCCTTGGTGCCATTCACGTCGCAC 2321848
Query 83303 TTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAA 83362
||||| |||||| | ||||| ||| |||| | | || | ||||| ||| | |
Sbjct 2321847 TTCTCAAAGAGCTTGAAGTTGGGCACGAACCTGCCATCA-GTGGGACGGACTTGAAGCCC 2321789
Query 83363 GGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCA 83422
| |||||| |||| |||||| ||||| || | |||||||| ||| ||| ||
Sbjct 2321788 TTCGGGATCTCCTTGTTCTTGGCGTTCTCCTGATGCACAAACTGGTTGCACCAGAAGCCG 2321729
Query 83423 AGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCC 83482
|||| | ||| ||| || || || |||||||||||||| | ||| ||||| | |
Sbjct 2321728 AGCATGAACAGGGCCC-AG-GCCGAGTCGCCGCTGCAGCTCAT---TCTAGGTGTAGT-C 2321675
Query 83483 CGGACCGTGCTACCTCAGAG-GGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541
|||||||| | |||| | | || || | |||||| ||| || || | ||| |
Sbjct 2321674 CGGACCGTTGTGCCTCGGCGACGAGGCCAGGTTCTCTATGGGCGGCCCCTTTCACCGCAG 2321615
Query 83542 GAAGCCTAAGCTCACAGGTTCTCCT--CCGGTAATCGGGCGTGCTGAGAAGGCGTACACA 83599
|||||| | |||| | || | || || | || || || ||||||||||||||
Sbjct 2321614 GAAGCCCAGGCTC-CTGGGCCCGCTGGCCAGCGCGCGCACGCGCACAGAAGGCGTACACA 2321556
Query 83600 GA 83601
||
Sbjct 2321555 GA 2321554
>seq650
Length=8275019
Score = 140 bits (154), Expect = 4e-28
Identities = 210/288 (73%), Gaps = 9/288 (3%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| || |||
Sbjct 2818093 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCACGCCTGC 2818151
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
||||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 2818152 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAATACAACTGCA 2818211
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || |||||| ||| | | |||| |||||
Sbjct 2818212 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 2818270
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646
|||||| ||||| |||| ||| ||||| ||||| |||| ||| ||||| |||
Sbjct 2818271 GTGCAGCTGCTGTACCCCCGGGCCAAAAACGACCGCGTCTGGA-CACTCGAGTTCGTGGG 2818329
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
||||||||||||||||||||||| | |||||| || ||||||
Sbjct 2818330 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 2818375
>seq28745
Length=672
Score = 125 bits (138), Expect = 9e-24
Identities = 179/249 (72%), Gaps = 5/249 (2%)
Strand=Plus/Minus
Query 83051 GGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTAC 83110
|||| |||||||| || ||||| |||||| | ||| |||| | ||| ||||||||||
Sbjct 444 GGGGACAGCAGGGCATCAATGTCCAGCTCCATGTCCATGGTCAGAAAGCAGTGGCTGTAC 385
Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170
||| |||| ||| | ||| | |||||| ||||||||| ||||||||||||| ||
Sbjct 384 CTGTGCACAGGCACACTGTCCGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCCATATCA 325
Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG--TGCTCATGT 83228
||| ||||| ||||||| | | || || | ||| | ||| ||||| | || |
Sbjct 324 CTGCAGCACAGCAGAGACCAAGTGAAGAACTTGCGGTAG-TCAAGAGCGCAGGGGCA--T 268
Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288
||| || ||||| ||||| |||| | | |||| || |||||| |||||| |||
Sbjct 267 TGTCCCTCGGCGCTGGCAGAGCCTGGGGAAAGAAGAGGACGAGCGGGTGTGCCTGTGCCT 208
Query 83289 CGTTGACCT 83297
| || ||||
Sbjct 207 CATTCACCT 199
>seq846
Length=2753428
Score = 125 bits (138), Expect = 9e-24
Identities = 179/249 (72%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 83051 GGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTAC 83110
|||| |||||||| || ||||| |||||| | ||| |||| | ||| ||||||||||
Sbjct 2179544 GGGGACAGCAGGGCATCAATGTCCAGCTCCATGTCCATGGTCAGAAAGCAGTGGCTGTAC 2179603
Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170
||| |||| ||| | ||| | |||||| ||||||||| ||||||||||||| ||
Sbjct 2179604 CTGTGCACAGGCACACTGTCCGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCCATATCA 2179663
Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG--TGCTCATGT 83228
||| ||||| ||||||| | | || || | ||| | ||| ||||| | || |
Sbjct 2179664 CTGCAGCACAGCAGAGACCAAGTGAAGAACTTGTGGTAG-TCAAGAGCGCAGGGGCA--T 2179720
Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288
||| || ||||| ||||| |||| | | |||| || |||||| |||||| |||
Sbjct 2179721 TGTCCCTCGGCGCTGGCAGAGCCTGGGGAAAGAAGAGGACGAGCGGGTGTGCCTGTGCCT 2179780
Query 83289 CGTTGACCT 83297
| || ||||
Sbjct 2179781 CATTCACCT 2179789
>seq130
Length=18515582
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/151 (72%), Gaps = 3/151 (2%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || || ||||| || ||||| ||||| || ||||| | || || | ||
Sbjct 13069840 CCTGATGTCCAAATTGGTTGCAAGGGAAGCCAAGAACCACCAGGCGCCTAGGA---AAGC 13069784
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
| | ||||||||||| | ||| ||||| |||||| || | |||||||| || || |
Sbjct 13069783 GGCATTGCAGCTCGTTGAGCTGGGTGTAGTCCCGGGTGGTTGTGCCTCAGAGTGAGGCCA 13069724
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541
| |||||||| |||| ||| ||| || ||
Sbjct 13069723 CATTCTCGATCAGCACTGCCCTGCCTCGGAA 13069693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608548920772920
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