Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq428 320 2e-82 seq26 248 1e-60 seq310 170 2e-37 seq650 140 4e-28 seq28745 125 9e-24 seq846 125 9e-24 seq130 82.4 9e-11 >seq428 Length=1969329 Score = 320 bits (354), Expect = 2e-82 Identities = 357/473 (75%), Gaps = 9/473 (2%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| |||||||| ||||||| | | |||||| | ||||| |||| ||||||||| Sbjct 243383 AGCAGGGTTTCGATGTCAGGCTCCATGTCGAGGGTCAGAAAGCGGCGGCTATACCTGCGC 243324 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAG-AACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 || |||| || || | ||| || | ||||||||||||||||||| || |||||||| Sbjct 243323 ACAGGCGCACCATCTGGGCCCCCCCGGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCG 243264 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 ||| ||||||||||||| |||| || ||||||| ||| ||| | | || ||| || Sbjct 243263 GCATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTGGTCCCT 243204 Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGAC 83295 || | ||||||| ||| || || |||||||||||||| || ||| ||| |||| || Sbjct 243203 GGGAGTGGGCAGGGTCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTTTGAGCCGTCCAC 243144 Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA---GCCGTTCCCAGGACGGACGTG 83352 |||||| ||||| ||||||| ||||| |||||||| ||||| | || ||||| | Sbjct 243143 CTCGCATTTCTCAAAGAGCACGAAGTTGGGCTCGAACCTGCCGT---CTGGTCGGACATA 243087 Query 83353 CTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACA 83412 ||| ||| | | |||||| | |||| | ||| ||||| | || ||||||| || Sbjct 243086 CTTGAGGCAGTTTAGGATCTCCTCGTTCTTCGAGTTCTCCTGATACCCAGACTGGTTGCA 243027 Query 83413 CGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTG 83472 | || | || ||||| ||||| ||||| | || |||||||||||||||| |||||||| Sbjct 243026 CAGGGAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGCGCCGCTGCAGCTTATTCATCTG 242967 Query 83473 AGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525 ||||| |||||| |||| | |||| || ||||| |||||||| || ||| Sbjct 242966 GGTGTAGTCCCGGCCCGTTGTGCCTC--AGTGACGCCACGTTCTCAGTGCGCA 242916 >seq26 Length=2428533 Score = 248 bits (274), Expect = 1e-60 Identities = 257/337 (76%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 1671891 AGCAGGGCTTCGATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 1671832 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| |||||||||||||||||||| || ||||||||| Sbjct 1671831 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCGG 1671772 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || ||||||||||||| |||| || ||||||| ||| ||| | | |||||| || Sbjct 1671771 CATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTCGTCACTG 1671712 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || || |||| ||||||||| || ||| ||| ||||| || Sbjct 1671711 GGAGTGGGCAGGGCCTCACGAAGAAAGGAGAAGAGCGGGTGCGCCTTTGAGCCGTTCACG 1671652 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || || ||||| || ||||| ||||| |||||||| || || || ||||| | ||| Sbjct 1671651 TCACATTTCTCAAATAGCATGAAGTTGGGCTCGAACCCACCTCCTGGTCGGACATACTTG 1671592 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||| | || |||||| | |||| ||||| |||| Sbjct 1671591 AGGCAGTTCAGGATCTCCTCGTTCTTCGCGTTCTCCT 1671555 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 |||||||||||||||| |||| ||| ||||| ||||||||||| | |||||||| |||| Sbjct 1671291 GGCGCCGCTGCAGCTCATTCAGCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACG 1671232 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTC 83567 | || ||||| ||||||| ||| |||||| | | |||| | |||||| || || || | Sbjct 1671231 CCACATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACCGGCTCCCCGC 1671172 Query 83568 CGGTAATCGGGCGTGCTGAGAAGGCGTACAC 83598 || ||||| || ||||||| ||| || Sbjct 1671171 CG------GGGCGCGCAGAGAAGGTGTATAC 1671147 >seq310 Length=8739377 Score = 170 bits (188), Expect = 2e-37 Identities = 368/542 (68%), Gaps = 19/542 (4%) Strand=Plus/Minus Query 83063 GCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGC 83122 || || | ||| |||| | | ||| |||| | ||| |||||||||||||| |||| Sbjct 2322079 GCTTCCAGGTCAGGCTTAAGGTCCATGGTCAGAAAGCTTCAGCTGTACCTGCGCATGGGC 2322020 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 |||||| || || |||||||||||||||||| || ||||| |||||| Sbjct 2322019 ACGCCGTCCAGGCCTCCCGGGAACTTCTCGAAGTTCCAAGCGACGTCCTTGCGG------ 2321966 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC 83242 | |||||| | || || ||| ||| ||| ||| || | | | || || |||| Sbjct 2321965 --ATACCAGGAGACGAACTTGGGCTCGGTCATGAGGGTAGTGGCGACATCACTGGGCGTG 2321908 Query 83243 GGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCAC 83302 |||| ||||| || ||||||| |||||| || || ||| | | || || || |||||| Sbjct 2321907 AGCAGAGCCTCGCGAAGGAAGGTGAAGAGTGGGTGCGCCTTGGTGCCATTCACGTCGCAC 2321848 Query 83303 TTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAA 83362 ||||| |||||| | ||||| ||| |||| | | || | ||||| ||| | | Sbjct 2321847 TTCTCAAAGAGCTTGAAGTTGGGCACGAACCTGCCATCA-GTGGGACGGACTTGAAGCCC 2321789 Query 83363 GGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCA 83422 | |||||| |||| |||||| ||||| || | |||||||| ||| ||| || Sbjct 2321788 TTCGGGATCTCCTTGTTCTTGGCGTTCTCCTGATGCACAAACTGGTTGCACCAGAAGCCG 2321729 Query 83423 AGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCC 83482 |||| | ||| ||| || || || |||||||||||||| | ||| ||||| | | Sbjct 2321728 AGCATGAACAGGGCCC-AG-GCCGAGTCGCCGCTGCAGCTCAT---TCTAGGTGTAGT-C 2321675 Query 83483 CGGACCGTGCTACCTCAGAG-GGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 |||||||| | |||| | | || || | |||||| ||| || || | ||| | Sbjct 2321674 CGGACCGTTGTGCCTCGGCGACGAGGCCAGGTTCTCTATGGGCGGCCCCTTTCACCGCAG 2321615 Query 83542 GAAGCCTAAGCTCACAGGTTCTCCT--CCGGTAATCGGGCGTGCTGAGAAGGCGTACACA 83599 |||||| | |||| | || | || || | || || || |||||||||||||| Sbjct 2321614 GAAGCCCAGGCTC-CTGGGCCCGCTGGCCAGCGCGCGCACGCGCACAGAAGGCGTACACA 2321556 Query 83600 GA 83601 || Sbjct 2321555 GA 2321554 >seq650 Length=8275019 Score = 140 bits (154), Expect = 4e-28 Identities = 210/288 (73%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 2818093 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCACGCCTGC 2818151 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 2818152 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAATACAACTGCA 2818211 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 2818212 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 2818270 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| ||||| |||| ||| ||||| ||||| |||| ||| ||||| ||| Sbjct 2818271 GTGCAGCTGCTGTACCCCCGGGCCAAAAACGACCGCGTCTGGA-CACTCGAGTTCGTGGG 2818329 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 2818330 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 2818375 >seq28745 Length=672 Score = 125 bits (138), Expect = 9e-24 Identities = 179/249 (72%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 83051 GGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTAC 83110 |||| |||||||| || ||||| |||||| | ||| |||| | ||| |||||||||| Sbjct 444 GGGGACAGCAGGGCATCAATGTCCAGCTCCATGTCCATGGTCAGAAAGCAGTGGCTGTAC 385 Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170 ||| |||| ||| | ||| | |||||| ||||||||| ||||||||||||| || Sbjct 384 CTGTGCACAGGCACACTGTCCGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCCATATCA 325 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG--TGCTCATGT 83228 ||| ||||| ||||||| | | || || | ||| | ||| ||||| | || | Sbjct 324 CTGCAGCACAGCAGAGACCAAGTGAAGAACTTGCGGTAG-TCAAGAGCGCAGGGGCA--T 268 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 ||| || ||||| ||||| |||| | | |||| || |||||| |||||| ||| Sbjct 267 TGTCCCTCGGCGCTGGCAGAGCCTGGGGAAAGAAGAGGACGAGCGGGTGTGCCTGTGCCT 208 Query 83289 CGTTGACCT 83297 | || |||| Sbjct 207 CATTCACCT 199 >seq846 Length=2753428 Score = 125 bits (138), Expect = 9e-24 Identities = 179/249 (72%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 83051 GGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTAC 83110 |||| |||||||| || ||||| |||||| | ||| |||| | ||| |||||||||| Sbjct 2179544 GGGGACAGCAGGGCATCAATGTCCAGCTCCATGTCCATGGTCAGAAAGCAGTGGCTGTAC 2179603 Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170 ||| |||| ||| | ||| | |||||| ||||||||| ||||||||||||| || Sbjct 2179604 CTGTGCACAGGCACACTGTCCGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCCATATCA 2179663 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG--TGCTCATGT 83228 ||| ||||| ||||||| | | || || | ||| | ||| ||||| | || | Sbjct 2179664 CTGCAGCACAGCAGAGACCAAGTGAAGAACTTGTGGTAG-TCAAGAGCGCAGGGGCA--T 2179720 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 ||| || ||||| ||||| |||| | | |||| || |||||| |||||| ||| Sbjct 2179721 TGTCCCTCGGCGCTGGCAGAGCCTGGGGAAAGAAGAGGACGAGCGGGTGTGCCTGTGCCT 2179780 Query 83289 CGTTGACCT 83297 | || |||| Sbjct 2179781 CATTCACCT 2179789 >seq130 Length=18515582 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || || ||||| || ||||| ||||| || ||||| | || || | || Sbjct 13069840 CCTGATGTCCAAATTGGTTGCAAGGGAAGCCAAGAACCACCAGGCGCCTAGGA---AAGC 13069784 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | ||||||||||| | ||| ||||| |||||| || | |||||||| || || | Sbjct 13069783 GGCATTGCAGCTCGTTGAGCTGGGTGTAGTCCCGGGTGGTTGTGCCTCAGAGTGAGGCCA 13069724 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| |||| ||| ||| || || Sbjct 13069723 CATTCTCGATCAGCACTGCCCTGCCTCGGAA 13069693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608548920772920