Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq469 140 3e-28 seq99 140 3e-28 seq615 107 2e-18 seq119 104 2e-17 seq164 91.5 2e-13 seq89 87.8 2e-12 seq205 86.0 6e-12 >seq469 Length=2995260 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 1051784 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051725 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1051724 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1051666 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 1051665 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1051606 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || || |||| | || || ||| Sbjct 1051605 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 1051557 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 1052012 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051953 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1051952 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1051894 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 1051893 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1051834 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || || |||| | || || ||| Sbjct 1051833 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 1051785 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 1052240 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052181 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1052180 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1052122 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 1052121 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1052062 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || || |||| | || || ||| Sbjct 1052061 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 1052013 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 1052601 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052542 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1052541 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1052483 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 1052482 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1052423 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || || |||| | || || ||| Sbjct 1052422 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 1052374 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 1052829 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1052770 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1052769 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1052711 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 1052710 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1052651 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || || |||| | || || ||| Sbjct 1052650 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 1052602 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 1051556 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 1051497 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1051496 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 1051438 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 1051437 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1051378 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| | || |||| || ||||| || Sbjct 1051377 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGTTTAAGGGGAGG 1051330 >seq99 Length=2554289 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | |||||||| ||||||||| | || || || | Sbjct 1822493 AAAATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCT 1822434 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | |||| | |||| || || | || || || |||||||| | || Sbjct 1822433 AGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGA 1822375 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| ||| ||||| |||||||| || | ||||| || || || Sbjct 1822374 CCAGCAGCGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1822315 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || ||||| || || |||| ||||||| || Sbjct 1822314 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 1822264 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || | | | Sbjct 1822262 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 1822203 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || |||||||| | ||||| Sbjct 1822202 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1822144 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| |||||||| || | ||||| || || ||||| Sbjct 1822143 GCAGCGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 1822084 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || ||||| || || |||| ||||||| || Sbjct 1822083 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 1822036 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | |||||||| ||||||||| | || || || || Sbjct 1817100 AAAATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 1817041 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || || ||||||||||| | ||| Sbjct 1817040 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGAC 1816981 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| ||| ||||| |||||||| || | ||||| || || ||| Sbjct 1816980 CAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 1816921 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| | || ||||| || || | || ||||||| ||| Sbjct 1816920 AACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 1816870 >seq615 Length=2269971 Score = 107 bits (118), Expect = 2e-18 Identities = 154/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| |||| || || ||| Sbjct 1647328 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 1647387 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | ||||| | ||||| ||||||||||| | || || Sbjct 1647388 GACACCACTGAGAATG-TCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCA 1647446 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | | |||||||||||| || || | |||| || |||||||| Sbjct 1647447 GCAGCGTCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCTGTCAGACTACAA 1647506 Query 40869 CA---TCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 | | ||||||||| |||| ||||| ||||| Sbjct 1647507 TATTCTTCAGAAGGAGTCCACCCTGCACTTAGTG 1647540 >seq119 Length=227305 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| | || || || || || | |||||| ||||||||| | || || || ||| Sbjct 86859 ATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 86800 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 86799 GACACCACTGAGAATG-TCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 86741 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTACA 40867 ||| | || || | ||| ||||||||||||| || | ||||| | || | ||||||| Sbjct 86740 GCAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTC-CATCAGACTACA 86682 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 | || ||||| ||| |||| ||||| Sbjct 86681 ATATTCAGAAAGAGTCCACCCTGCA 86657 >seq164 Length=6526486 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || || || || || || || ||||| || |||||| |||| || || |||| Sbjct 3962499 ATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACT 3962440 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | | ||| ||||| ||||||||||| | |||||| Sbjct 3962439 GACACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACCAG 3962380 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||| | | |||| ||||||||||| || | || || || || ||| | Sbjct 3962379 CAGCATCTCATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACGAT 3962320 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | ||||| ||| |||| ||||| |||| | || ||| | |||||| Sbjct 3962319 GTTCAGAAAGAGTCCACCTTGCATTCAGTGCTTCGTTTGGGAGGCGGC 3962272 >seq89 Length=3644534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/180 (73%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 40716 GGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG-TGCAAACGCTCAAGGAAA 40774 |||||| ||| ||||| |||| || || || |||| | || || | ||| | | Sbjct 1710651 GGGCAAGACCCTCACCCTCGAGGTTGAGCCCTGTGACACCACTGAGAATG-TCAGAGCTA 1710709 Query 40775 AAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAAC 40834 |||| ||||| ||||||||||| | |||||||| || || | | ||||||| ||| Sbjct 1710710 AAATCAAAGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGAGTTTCGCGGGCGAAC 1710769 Query 40835 AGCTGGACGACGAGCGCACCC--TCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| || | ||||||| ||| ||||| || || |||||||||||| | ||||| Sbjct 1710770 AGCTGGATGAGGGCCGCACCCCGTCA--GACTAGAATATTCAGAAGGAGGCCTC-CTGCA 1710826 >seq205 Length=8045950 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| ||| || || ||| Sbjct 434893 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGGCCATCACCCTCGG-GTTGAGCCCAGT 434835 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | |||| | ||||| ||||||||||| | ||||| Sbjct 434834 GACACCACTGAGAATG-TCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCGCCTGACCA 434776 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||||||||||||||||| |||| | ||| || |||||| Sbjct 434775 GCAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGACGGGGACACTCTGTCACACTACAG 434716 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| ||||| || | ||||| | ||| | | |||| |||||| Sbjct 434715 TATCC---AGGAGTCCGCCCTGCACTTGGTGCT-TGTCTGAGAGGCGGC 434671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515009422062480