Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq17 98.7 2e-15 >seq17 Length=4188677 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| ||||| || || || || || ||||| || || |||||||| || ||| Sbjct 339068 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 339127 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || |||||||||||||| | ||| |||||||| | Sbjct 339128 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 339187 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 | ||||| || ||||| ||| | || || || |||| Sbjct 339188 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAGG 339224 Score = 96.9 bits (106), Expect = 6e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||||| ||||| || |||||||| |||||||| | || ||||| Sbjct 340259 GCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATGGG 340318 Query 52117 ATGGCCGCTTGTGGTCCTATG-TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 || | || | ||| || | ||||||| |||||| ||||||||||| || || || || Sbjct 340319 TTGACTGCCTTTGGCCCGTGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCAT 340377 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 340378 GTTGCAGCTGGT 340389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922820908882920