Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq99 123 3e-23 seq3709 102 9e-17 seq684 100 3e-16 seq10222 98.7 1e-15 seq1280 98.7 1e-15 seq469 98.7 1e-15 seq119 95.1 1e-14 seq205 89.7 6e-13 seq2167 86.0 7e-12 seq89 82.4 9e-11 >seq99 Length=2554289 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| |||| |||| || |||||| || || |||||||||| Sbjct 1822264 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1822323 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 1822324 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 1822383 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 1822384 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACC 1822443 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| |||||||| | ||||| || ||||| |||||||| || Sbjct 1822444 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTGAC 1822496 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| |||| |||| || |||||| || || |||||||||| Sbjct 1822036 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1822095 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 1822096 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 1822155 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 1822156 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACC 1822215 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 1822216 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262 >seq3709 Length=210978 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 91324 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 91265 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 91264 ATACTAACGAGGAATG 91249 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 134982 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 135041 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 135042 TACTAACGAGGA 135053 >seq684 Length=8613401 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2188118 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2188059 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2188058 ATACTAACGAGGA 2188046 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4043078 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4043019 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4043018 ATACTAACGAGGA 4043006 >seq10222 Length=1112 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 520 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 461 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 460 TACTAACGAGGA 449 >seq1280 Length=1139451 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 109922 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 109863 Query 60125 ATACTACCGAGGATTGA 60141 |||||| |||||| ||| Sbjct 109862 ATACTAACGAGGAATGA 109846 >seq469 Length=2995260 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1063101 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1063160 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1063161 TACTAACGAGGA 1063172 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1069971 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1070030 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1070031 TACTAACGAGGA 1070042 >seq119 Length=227305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| ||| ||| || ||||||||||| || | |||| || | || || Sbjct 86650 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTC 86709 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || | || || || || |||||||||| | || | || ||||||||| Sbjct 86710 CAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 86769 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||||| || | ||||| || | || || || | |||||||| || Sbjct 86770 GATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 86829 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| | || ||||| ||||||| ||||| Sbjct 86830 GCCCATCAGGGTCTTCACAAAGACCTGCAT 86859 >seq205 Length=8045950 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| | | ||||| | ||| |||| | | |||||| | |||| || Sbjct 434688 CACCAAGTGCAGGGCGGACTCCT---GGATACTGTAGTGTGACAGAGTGTCCCCGTCCTC 434744 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || || || || || || |||||||||| | ||| | || ||||||||| Sbjct 434745 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 434804 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| ||||| || | ||||| || | || || ||| ||||||| || Sbjct 434805 GGTTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACC-CGAGGGTGATGGCCTT 434863 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||| ||||| |||||||| ||||| Sbjct 434864 GCCCGTTAGGGTCTTCACAAAGATCTGCAT 434893 >seq2167 Length=69529 Score = 86.0 bits (94), Expect = 7e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 60077 GGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGG 60136 |||||||||||| ||||||||||||||||||| || ||||| |||||||||||| ||||| Sbjct 53504 GGAATCGAACCCCGGTCTCCCGCGTGACAGGCAGAGATACTTACCACTATACTAACGAGG 53563 >seq89 Length=3644534 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| |||||||| || || | | | || || | ||||| ||||| | || ||||| Sbjct 1710816 CTCCTTCTGAATATTCTAGTCTGACGGGGTGCGGCCCTCATCCAGCTGTTCGCCCGCGAA 1710757 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 | || ||||||||||| | || | || ||||||||| ||||||| | ||| | Sbjct 1710756 ACTCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTTGATTTTAGCTCTGACATT 1710697 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| | | || || |||| |||| ||| |||||| | || |||| || Sbjct 1710696 CTCAGTGGTGTCACAGGGCTCAACCTCGAGGGTGAGGGTCTTGCCCATCAGGCTCTTCAC 1710637 Query 43172 AAAGA 43176 ||||| Sbjct 1710636 AAAGA 1710632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571584777316440