Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq99 113 3e-20 seq469 82.4 5e-11 >seq99 Length=2554289 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || || ||||| |||||||| || || Sbjct 1822036 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1822095 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||||||||| ||||||||||||||||| || Sbjct 1822096 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 1822155 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | || | ||| | | || || Sbjct 1822156 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACC 1822215 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| || || ||||| ||||||||||| Sbjct 1822216 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1822262 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || || ||||| |||||||| || || Sbjct 1822264 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1822323 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||||||||| ||||||||||||||||| || Sbjct 1822324 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 1822383 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | || | ||| | | || || Sbjct 1822384 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCCACC 1822443 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || ||||| ||||||||||| Sbjct 1822444 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1822490 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| |||||||| || || || ||| | || Sbjct 1816886 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1816945 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||||||||| ||||||| ||||||||| || | || |||||| || Sbjct 1816946 TCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 1817005 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 1817006 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1817065 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | || ||||| ||||||||||| Sbjct 1817066 TTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1817097 >seq469 Length=2995260 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||| ||| | ||| ||| ||||| ||||||||||| ||||| || | || Sbjct 1051344 CAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1051403 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || || || || | || ||||||||| ||| | || ||||||||| Sbjct 1051404 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 1051463 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 1051464 TTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1051523 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| ||||||||||| Sbjct 1051524 CTTACCCGTCAAGGTCTTCACGAAGATCTGCAT 1051556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322943745766880