Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq221 1903 0.0 seq170 91.5 1e-13 >seq221 Length=1350224 Score = 1903 bits (2110), Expect = 0.0 Identities = 1453/1723 (84%), Gaps = 49/1723 (3%) Strand=Plus/Plus Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130 ||||||| |||| ||||||| || |||| ||| || |||||| | ||| ||||| Sbjct 1144818 GTCCTAATCCCAGCCCCAGCACGATCAGCT---TTGTAGGGTCAGGTGAGAGAACTCCAT 1144874 Query 107131 CCACA-------------AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGA 107177 | || ||| || ||||| | || ||||||||||| ||||||| ||| Sbjct 1144875 CAGCAGGCTGGGTGTATGAGGATCCTAGGCGGATCTGGACTGAGGATACTTGTCTAGAGA 1144934 Query 107178 AGACATCTATCTTTACCATCACTCTGGAGTTGAACTTGATGTTCT-------------GG 107224 ||| |||| ||| || ||||| |||||||||||||||||||| || Sbjct 1144935 AGAAATCTGGTTTTGCCTTCACTGTGGAGTTGAACTTGATGTTCCTTGAGCCCATTCAGG 1144994 Query 107225 ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTG 107284 |||||||||||||| |||||||||||||||||| |||||| || |||||| |||| |||| Sbjct 1144995 ATTAGTTTGTAATTGAAGGCATTTTGTTCTGTCTAAGGATTTCATCCTCCTCCTTCCCTG 1145054 Query 107285 TGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTG 107344 ||| |||||||| | ||||||||| ||| ||||||| || ||||||||||||| | || Sbjct 1145055 TGCACAAACTCTGCCAATCTCCCATTCCACGAAGATGACTTGGTGGAAGAAGAAATTCTG 1145114 Query 107345 CCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAG 107404 |||| | |||||||||||||| ||||||||||||||||||||||| ||||| || |||| Sbjct 1145115 CCGGAGGCATCATCTGTGGGCTTTGGGCTGCTATATGCTGCTGGCCCTTGTTGCTTTGAG 1145174 Query 107405 ACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCA 107464 |||||| ||||| | |||||||| |||| |||| ||||||| |||||||||||||| || Sbjct 1145175 ACTTTCTCTCAGACTGAAATGTGACGTAGTTTCCCTGGATCTAGAGTCCAGGGACTTGCA 1145234 Query 107465 GAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCAT 107524 || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1145235 AAGCCAGCACTGTAGGGACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAAGAGATCCAT 1145294 Query 107525 CAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAA 107584 |||||||||||||||||| ||||||||||||||||||||| || |||| ||||| ||||| Sbjct 1145295 CAACTGTTCTGGGATCACCCGAGGGGACCAGGAAGCAGTGATCAAGGCTCTCCTGGACAA 1145354 Query 107585 CCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAG 107644 |||||| || ||||| |||||| |||| |||| | ||| | ||||||||||| ||||| Sbjct 1145355 CCTGGAGGTCAAGAAGAAGCGGGAGCCTTTCACAGACACTGACTACCTCAACATGACCAG 1145414 Query 107645 AGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGA 107704 |||||||||| || |||||| |||||| |||||||| |||||||||||| |||||||| Sbjct 1145415 GGACTGTGAGCAGTTTAAGGCCAAAAGGAGGTTCATACGGTTCCCACTGAGCAAAGAAGA 1145474 Query 107705 GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACG 107764 ||||||| ||||| || ||||| |||||||||||||||||| |||||||||||||| | Sbjct 1145475 ATTAGACTTTCCCATCGCTTACTCTATGGTGGTCCATGAGAAGGTTGAAAACTTTGAAAG 1145534 Query 107765 GCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTC 107824 |||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 1145535 GCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGAGAAGTC 1145594 Query 107825 CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCAT 107884 |||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| Sbjct 1145595 CCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATTATTTCATGCTTCCCGAATGTCTTCAT 1145654 Query 107885 GGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAA 107944 ||||||||| ||||| | |||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1145655 GGCCAGTAAATTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAA 1145714 Query 107945 CTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGG 108004 |||||||||||||||||||| |||| | ||||| ||||| ||||||||||| || ||||| Sbjct 1145715 CTGTATGGAAGACTTGCTCCGGAGCCCGGTGCCGTGGAAATACTTACTGAACACCTGCGG 1145774 Query 108005 GACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGG 108064 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1145775 GACAGACTTTCCTATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGG 1145834 Query 108065 TAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCG 108124 ||||||||||||||||| ||| ||||| |||||| |||||| | |||||||||||| | Sbjct 1145835 GAAGAACAGTATGGAGTCAGAGATACCTACTGAGTACAAAAAGACTCGCTGGAAATATCA 1145894 Query 108125 CTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAA 108184 ||| || ||||||||||| || | |||| ||||||||||||||||||||||||||| Sbjct 1145895 CTACGAAGTGACAGACACGTTGCAAGTAACCAACAAGATGAAGGACCCTCCCCCTGATAA 1145954 Query 108185 TTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGT 108244 |||||| |||||||| |||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct 1145955 TTTACCTATGTTCACGGGGAATGCCTATATTGTGGCTTCTCGAGGCTTTATCCAACATGT 1146014 Query 108245 CTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGA 108304 |||||| ||||| ||||||||| | ||| ||||||||| |||||||||||| |||||||| Sbjct 1146015 CTTAGAGAACCCCAAATCCCAACGGCTGATTGAATGGGCCAAAGACACCTACAGCCCCGA 1146074 Query 108305 CGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCA 108364 |||||||||||||| |||||||||||||| || |||||||||||||||||||| ||| Sbjct 1146075 TGAACACCTCTGGGCTACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCA 1146134 Query 108365 CCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCA 108424 |||||||| |||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 1146135 CCCCAAGTTTCACATCTCAGACATGACGGCCATCGCCAGGCTGGTCAAGTGGCAAGACCA 1146194 Query 108425 CGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGC 108484 ||||||||| |||| |||||||| |||||||| || |||||||||||||| | | |||| Sbjct 1146195 CGAGGGAGACATCAGTATGGGGGCACCTTATGCCCCTTGCTCTGGAATCCACCAGCGGGC 1146254 Query 108485 CATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGC 108544 |||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 1146255 TGTCTGTGTTTATGGGGCTGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGC 1146314 Query 108545 AAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACG 108604 |||||||||||||| | |||||||||||| || || ||||||||||||||||| |||| Sbjct 1146315 TAACAAGTTTGACCCCAAGGTGGATGATAATGTTCTTCAGTGCTTAGAAGAGTATTTACG 1146374 Query 108605 TCATAAGGCCATCTATGGGACTGAACTTTGAG----------------CTGC--ACTGTG 108646 ||||||||||||||||| ||||||| |||| |||| | | | Sbjct 1146375 CTATAAGGCCATCTATGGGGCTGAACTCTGAGATACACCTTGAGAGAACTGCTACCCGAG 1146434 Query 108647 GGCCAGGGACTG-TGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGA 108705 || |||| || | || |||||||||||| ||| |||| || |||||||| || ||| Sbjct 1146435 GGGCAGGAACAGATGTAAACATGCCCAGGACGTGCTGGGACATTGTGGGGT-GGAGACCG 1146493 Query 108706 GGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 ||||| ||||||||| |||||||||| | | || || ||||| Sbjct 1146494 GGGCTCTGGAATCCACGGCATCCCCCGGTGGAAGGGGACTGCT 1146536 >seq170 Length=4243350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 196/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||||| || || ||||| ||||| | ||||||||||| ||||| | | | Sbjct 890598 GAGTGGGCAAAAGATACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAG-GAT 890656 Query 108336 CCGTGGA-TGCCTGGCTC--TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATG-AC 108391 | || | | || ||||| ||| | || | ||||| |||| ||||||||| || Sbjct 890657 GCCTGAAGTCCCAGGCTCACTGTCCTTAAGTTCT--AAGTACGACATGTCAGACATGCAC 890714 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||| | || |||||||||||| || || || || || ||| || || Sbjct 890715 T-CTATTGCCAGGTTTGTTAAGTGGCAGTACTTTGAAGGTGACGTTTCCAAGGGCGCCCC 890773 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | || ||| || ||||| | | | | || ||| ||| ||||| ||| | Sbjct 890774 CTACCCGCCGTGCAGCGGCATCCACGTGCGCTCTGTATGTGTTTTCGGAGCCGGTGACTT 890833 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| || || || ||||| || || || ||||||||| Sbjct 890834 GAACTGGATGCTGCACGTGCACCACCTGTTTGCCAATAAGTTTGAC 890879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348130543054602