Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq99 111 1e-19
seq48 93.3 4e-14
seq317 86.0 6e-12
seq615 82.4 7e-11
>seq99
Length=2554289
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || |
Sbjct 1822262 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 1822203
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || ||| ||||||||| | || || ||||||
Sbjct 1822202 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1822143
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || ||||| ||||| ||| ||||||| ||| | ||||| |||
Sbjct 1822142 CAGCGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1822083
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || ||||| || || ||||| || | |||||||| ||||
Sbjct 1822082 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGGTA 1822034
Score = 109 bits (120), Expect = 5e-19
Identities = 166/235 (71%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || ||||| ||||| |||| ||||| || |||||| | || || ||
Sbjct 1822495 TCAAA-ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAG 1822437
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| ||||| |||| | || || | || ||| ||||||||| | || ||
Sbjct 1822436 CCTAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCT 1822377
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366
||||||||||| || || ||||| ||||| ||| ||||||| ||| | |||
Sbjct 1822376 GACCAGCAGCGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 1822317
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || || ||||| || || ||||| || | |||||||| ||||
Sbjct 1822316 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGGTA 1822262
>seq48
Length=13907917
Score = 93.3 bits (102), Expect = 4e-14
Identities = 109/149 (73%), Gaps = 10/149 (7%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || |||||||| ||||| || || || ||||| || || |||||
Sbjct 114498 ACCTCATCTTTGCTAGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTT 114557
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| || | ||| ||||||||||||||||| ||
Sbjct 114558 CCCAGGTTCTGCTGGTTGCTCTTCC----------ATCTTTGTAGAGCATGTACGGGGTA 114607
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| |||||| ||| ||||| ||||| ||
Sbjct 114608 CCTGTCTCGGTCTGAGACTCAATGATGGC 114636
>seq317
Length=3209840
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
|||||||||||| || ||| || ||||| | |||||||| ||||| || |||||||
Sbjct 2105601 GATGAACCACTTCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTTCCTATCGAATATCAT 2105660
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623
|| |||||| | ||||| || || || || || || |||||||| | || || |||
Sbjct 2105661 GATATTTGGCAAATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTA 2105717
>seq615
Length=2269971
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| ||
Sbjct 1647328 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 1647387
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| || | |||||| | ||| ||||||||| ||| | || || || |||
Sbjct 1647388 GACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCAG 1647447
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || | ||||||||| | || ||
Sbjct 1647448 CAGCGTCTGATTTTTGTGGGCAAACAGCTAGAGGA 1647482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445584900638160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |