Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq317 125 7e-24 seq279 111 1e-19 seq48 87.8 2e-12 >seq317 Length=3209840 Score = 125 bits (138), Expect = 7e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| |||||||| | || ||||||| |||||| || || Sbjct 2108760 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 2108701 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 2108700 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 2108641 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 2108640 ACAACACGTTCTCC 2108627 >seq279 Length=9007507 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | || ||||| | |||| || | Sbjct 4426777 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 4426718 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | |||||||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct 4426717 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 4426658 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 4426657 CCACCACCCTTTCCCC 4426642 >seq48 Length=13907917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || || || |||||||| Sbjct 107466 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 107525 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | || || |||| || || ||||||||||| || || || || | Sbjct 107526 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 107585 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 107586 CTGTTTCTTATACCAT 107601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468334034271120