Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq251 275 5e-69
seq25 140 3e-28
seq2246 84.2 2e-11
>seq251
Length=3596318
Score = 275 bits (304), Expect = 5e-69
Identities = 493/716 (69%), Gaps = 7/716 (1%)
Strand=Plus/Plus
Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983
||| || ||| ||| || ||||| ||| || || ||||| ||||| |||| ||| ||
Sbjct 284317 CAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACC 284376
Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043
|| ||||||| |||| ||| || |||| || || || || | |||||||||||||||
Sbjct 284377 TGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTT 284436
Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103
|| || || || ||||||||||| | |||| || |||||||||||||||||||| ||
Sbjct 284437 GAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACC 284496
Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163
||||||| ||||| || | | || || || ||||| ||| | ||| |||||
Sbjct 284497 GTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTG 284556
Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC 21223
|| ||||| || ||||| | ||| | | || | || | || ||| ||
Sbjct 284557 TTTTGGATTCCAGGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTC 284616
Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283
||| | |||| ||||| || || | || || | | || | | |||
Sbjct 284617 AGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTA 284676
Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC-GGC 21342
|| ||||||||||| |||||||| || | ||| || || || ||||| || || | ||
Sbjct 284677 TTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATCTCCTTCTCTGGT 284736
Query 21343 GGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401
|| ||| ||| | || | |||| | | | |||||||| | |||||||| |||||
Sbjct 284737 GGA----GAATCCCAG-GCTGTCCAAGACGCCTCGGGACCCATTGGCGTCCCAGATTTTC 284791
Query 21402 ACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCC 21461
|| || | ||||| || | | || ||||| ||| |||||||||||||||| |||
Sbjct 284792 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCC 284851
Query 21462 TCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGG 21521
|||| || ||| |||| || || | |||||| || | ||| ||||| || || ||||||
Sbjct 284852 TCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGG 284911
Query 21522 TTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTC 21581
| || || ||||| | |||||||| ||| |||||| |||||| | ||| ||| ||
Sbjct 284912 CTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCAGTCGTCCTTC 284971
Query 21582 TGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTCGCCGTG 21637
| |||| | || | | | ||| |||||||||||||||| |||||
Sbjct 284972 CGGGAGCCGCAGCGGAGGATGTACTTAATCTGCCCCAAGTACTGCAGCTCCCCGTG 285027
>seq25
Length=14465811
Score = 140 bits (154), Expect = 3e-28
Identities = 136/175 (78%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||||| |||| ||| ||||||| | || || |||| ||||||||||||||| || |
Sbjct 2982282 TCAGGCCTGTGATGTGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 2982341
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | |||| |||||||||||||||||||||||| ||
Sbjct 2982342 GCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 2982401
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163
||||||| ||||| || | |||| || || ||||| ||||| ||| ||| ||
Sbjct 2982402 CCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 2982456
>seq2246
Length=1060343
Score = 84.2 bits (92), Expect = 2e-11
Identities = 149/216 (69%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022
|| || ||||| || || |||| || ||||| || |||| || || ||||| |||
Sbjct 252816 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGATCTCCTTGTGGAGGTTCCTTGAAT 252875
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTC-ACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081
||||| || | || | ||||||||||| | | ||| || ||||| || | |||||
Sbjct 252876 TCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAGGTCGATTCTTCTCTAGAATGGA 252935
Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141
||||| || || | || ||||| |||| ||||| || |||| | || || | | |
Sbjct 252936 GAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGCTGT 252995
Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAG 3177
|||||| | | |||||| | | ||| || || ||
Sbjct 252996 GGTCATTCTTTTGAAATACTTAAATTCATTCCTGAG 253031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427606180013040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |