Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq251 275 5e-69 seq25 140 3e-28 seq2246 84.2 2e-11 >seq251 Length=3596318 Score = 275 bits (304), Expect = 5e-69 Identities = 493/716 (69%), Gaps = 7/716 (1%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || ||| ||| || ||||| ||| || || ||||| ||||| |||| ||| || Sbjct 284317 CAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACC 284376 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || ||||||| |||| ||| || |||| || || || || | ||||||||||||||| Sbjct 284377 TGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTT 284436 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || || || || ||||||||||| | |||| || |||||||||||||||||||| || Sbjct 284437 GAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACC 284496 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | | || || || ||||| ||| | ||| ||||| Sbjct 284497 GTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGCGGGAGGGCCGTGAGCGGGAGGTG 284556 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC 21223 || ||||| || ||||| | ||| | | || | || | || ||| || Sbjct 284557 TTTTGGATTCCAGGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTC 284616 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 ||| | |||| ||||| || || | || || | | || | | ||| Sbjct 284617 AGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTA 284676 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC-GGC 21342 || ||||||||||| |||||||| || | ||| || || || ||||| || || | || Sbjct 284677 TTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATCTCCTTCTCTGGT 284736 Query 21343 GGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 || ||| ||| | || | |||| | | | |||||||| | |||||||| ||||| Sbjct 284737 GGA----GAATCCCAG-GCTGTCCAAGACGCCTCGGGACCCATTGGCGTCCCAGATTTTC 284791 Query 21402 ACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCC 21461 || || | ||||| || | | || ||||| ||| |||||||||||||||| ||| Sbjct 284792 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCC 284851 Query 21462 TCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGG 21521 |||| || ||| |||| || || | |||||| || | ||| ||||| || || |||||| Sbjct 284852 TCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGG 284911 Query 21522 TTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTC 21581 | || || ||||| | |||||||| ||| |||||| |||||| | ||| ||| || Sbjct 284912 CTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCAGTCGTCCTTC 284971 Query 21582 TGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTCGCCGTG 21637 | |||| | || | | | ||| |||||||||||||||| ||||| Sbjct 284972 CGGGAGCCGCAGCGGAGGATGTACTTAATCTGCCCCAAGTACTGCAGCTCCCCGTG 285027 >seq25 Length=14465811 Score = 140 bits (154), Expect = 3e-28 Identities = 136/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| | || || |||| ||||||||||||||| || | Sbjct 2982282 TCAGGCCTGTGATGTGTGCGATCATGCAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 2982341 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||||||||||||||||||| || Sbjct 2982342 GCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 2982401 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | |||| || || ||||| ||||| ||| ||| || Sbjct 2982402 CCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 2982456 >seq2246 Length=1060343 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || |||| || || ||||| ||| Sbjct 252816 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGATCTCCTTGTGGAGGTTCCTTGAAT 252875 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTC-ACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081 ||||| || | || | ||||||||||| | | ||| || ||||| || | ||||| Sbjct 252876 TCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAGGTCGATTCTTCTCTAGAATGGA 252935 Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| || || | || ||||| |||| ||||| || |||| | || || | | | Sbjct 252936 GAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGCTGT 252995 Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAG 3177 |||||| | | |||||| | | ||| || || || Sbjct 252996 GGTCATTCTTTTGAAATACTTAAATTCATTCCTGAG 253031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427606180013040