Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq317 147 3e-30
seq48 125 1e-23
seq279 104 3e-17
>seq317
Length=3209840
Score = 147 bits (162), Expect = 3e-30
Identities = 108/126 (86%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| ||||| ||||| |||||||| ||||| || ||||| || || ||||| |
Sbjct 2108762 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 2108703
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || |||||||||||||||||||| |||||||||||||
Sbjct 2108702 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 2108643
Query 50102 CAACAA 50107
| ||||
Sbjct 2108642 CTACAA 2108637
Score = 93.3 bits (102), Expect = 6e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| || || || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 2106646 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 2106587
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| | || || |||||||| ||||||
Sbjct 2106586 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 2106541
>seq48
Length=13907917
Score = 125 bits (138), Expect = 1e-23
Identities = 110/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |
Sbjct 107466 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 107525
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| ||||||||||||||||| ||||||||||| || || ||||| || || | | ||||
Sbjct 107526 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 107585
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 107586 CTGTTTCTTATACCATA 107602
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| ||||||||||| || | || || || |||| | |||
Sbjct 115798 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 115857
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
||||| |||||||| ||||| || | ||| || ||| | | || || ||||||| ||
Sbjct 115858 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 115917
Query 80059 TCCAAGTATATGGC 80072
|||| ||| || ||
Sbjct 115918 TCCAGGTAAATAGC 115931
Score = 91.5 bits (100), Expect = 2e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| |||||||| || || | || | ||| | ||||| || || || || ||||| |||
Sbjct 111317 TACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 111376
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
||||||||||| || || | |||||| || || || || | || ||||| || ||
Sbjct 111377 TAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCCGGACTCTCAAAAGGGTAT 111436
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 111437 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGCGT 111496
Query 79480 TTATTAGA 79487
||||| ||
Sbjct 111497 TTATTTGA 111504
>seq279
Length=9007507
Score = 104 bits (114), Expect = 3e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || ||||| |||||||| ||||| || ||||| || || | ||| ||
Sbjct 4426775 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 4426716
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||||||||| | ||||| || || || ||||| |||||||| || || ||||||||
Sbjct 4426715 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 4426656
Query 50104 AC 50105
||
Sbjct 4426655 AC 4426654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717976347879720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |