Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21]
32,573 sequences; 2,004,063,690 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq99 138 3e-27
seq119 116 9e-21
seq2401 102 2e-16
seq17 100 7e-16
seq317 89.7 1e-12
>seq99
Length=2554289
Score = 138 bits (152), Expect = 3e-27
Identities = 171/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || || || | || || || ||||| || || || |||
Sbjct 1822261 ATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCA 1822320
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| || || || || || || || |||| ||| || ||||||
Sbjct 1822321 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGA 1822380
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||| ||||| || || || || || | ||| |||||||| ||
Sbjct 1822381 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCC 1822440
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || ||||| || || | || || || || ||||||||||||
Sbjct 1822441 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 1822494
Score = 132 bits (146), Expect = 1e-25
Identities = 150/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || ||||| ||||| | || ||||| || || || ||
Sbjct 1816901 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1816960
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || |||||||| || |||||||| || || || |||||||| ||||| || ||
Sbjct 1816961 GCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 1817020
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || || ||||| || || || ||||| || || | ||
Sbjct 1817021 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 1817080
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || || ||||||||||||
Sbjct 1817081 TTCACGAAGATCTGCATTTTG 1817101
>seq119
Length=227305
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||||||||| ||||| ||| |||| | ||| || || || ||||| |
Sbjct 86663 GTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCCAGCTGTTTGCTC 86722
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || ||| || ||||| || || || || || || || || || |||||
Sbjct 86723 GCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTG 86782
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || ||| || || || || ||||| || || || ||||| || | || ||
Sbjct 86783 ACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATCAGGGTC 86842
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| | ||||||
Sbjct 86843 TTCACAAAGACCTGCAT 86859
>seq2401
Length=178734
Score = 102 bits (112), Expect = 2e-16
Identities = 243/365 (67%), Gaps = 12/365 (3%)
Strand=Plus/Minus
Query 65639 TCCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACAGAAAG 65698
|||||| ||||||||||| | || || ||||| || ||||| | | ||
Sbjct 96739 TCCAGTGGAACCAAAACCTCCTGAGCCCCTTTCAGTGTCATCTAACACTTGAACTT---- 96684
Query 65699 AGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTATCGCC 65758
||||| |||||||| || || | |||| | |||| || || | || ||| ||
Sbjct 96683 --CCTCC---ATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACC 96629
Query 65759 TTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCT 65818
|| | | ||||| || || || |||||||||| || | |||||||| ||| |
Sbjct 96628 CTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGT 96569
Query 65819 ATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGA 65878
||| ||| |||| | |||||||| ||||||||||| |||| || || || || ||
Sbjct 96568 ATAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGA 96509
Query 65879 TCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAA--TCAGTAAAT 65936
|| ||||||| ||| || || || || ||||| | ||| | ||| || ||
Sbjct 96508 ACGTGGAGCTACTCTCCCGTAGTACCCAGAAGGAAGAGCTAT-CTGAAATGTCGGTTTTC 96450
Query 65937 ACCAATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCT 65996
|| | | || ||||||||| | | || ||| |||| || || || || ||||| ||
Sbjct 96449 ACAAGGGCCTTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCC 96390
Query 65997 GCAGC 66001
|| ||
Sbjct 96389 GCGGC 96385
>seq17
Length=4188677
Score = 100 bits (110), Expect = 7e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||| | || ||||| ||||| || || | || || | || |||||||| |
Sbjct 339068 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 339127
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613
|||||| || ||| | ||| || || ||||||||||| | ||| |||||||| |||
Sbjct 339128 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 339187
Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648
| ||||| || ||||| ||| ||||||| |||||
Sbjct 339188 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 339222
>seq317
Length=3209840
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
|| |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| |||||
Sbjct 2110010 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 2110069
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611
|||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| |
Sbjct 2110070 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 2110129
Query 269612 TTCACTACAGATGCAGAATTCTAA 269635
|| || ||||| || ||||||
Sbjct 2110130 TTTACCTTGGATGCTGACTTCTAA 2110153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150917873592684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |