Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20dromedarius_20[refseq_20GCF_5F000767585.1_202014-10-21] 32,573 sequences; 2,004,063,690 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq99 138 3e-27 seq119 116 9e-21 seq2401 102 2e-16 seq17 100 7e-16 seq317 89.7 1e-12 >seq99 Length=2554289 Score = 138 bits (152), Expect = 3e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || || ||| Sbjct 1822261 ATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCA 1822320 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || || || || |||| ||| || |||||| Sbjct 1822321 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCGCTGCTGGTCAGGA 1822380 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || || || | ||| |||||||| || Sbjct 1822381 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTAGGCTCC 1822440 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || | || || || || |||||||||||| Sbjct 1822441 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 1822494 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || ||||| ||||| | || ||||| || || || || Sbjct 1816901 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1816960 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| || |||||||| || || || |||||||| ||||| || || Sbjct 1816961 GCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 1817020 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| || || | || Sbjct 1817021 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 1817080 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 1817081 TTCACGAAGATCTGCATTTTG 1817101 >seq119 Length=227305 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||||||||| ||||| ||| |||| | ||| || || || ||||| | Sbjct 86663 GTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCCAGCTGTTTGCTC 86722 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || ||| || ||||| || || || || || || || || || ||||| Sbjct 86723 GCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTG 86782 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || ||| || || || || ||||| || || || ||||| || | || || Sbjct 86783 ACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATCAGGGTC 86842 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| | |||||| Sbjct 86843 TTCACAAAGACCTGCAT 86859 >seq2401 Length=178734 Score = 102 bits (112), Expect = 2e-16 Identities = 243/365 (67%), Gaps = 12/365 (3%) Strand=Plus/Minus Query 65639 TCCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACAGAAAG 65698 |||||| ||||||||||| | || || ||||| || ||||| | | || Sbjct 96739 TCCAGTGGAACCAAAACCTCCTGAGCCCCTTTCAGTGTCATCTAACACTTGAACTT---- 96684 Query 65699 AGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTATCGCC 65758 ||||| |||||||| || || | |||| | |||| || || | || ||| || Sbjct 96683 --CCTCC---ATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACC 96629 Query 65759 TTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCT 65818 || | | ||||| || || || |||||||||| || | |||||||| ||| | Sbjct 96628 CTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGT 96569 Query 65819 ATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGA 65878 ||| ||| |||| | |||||||| ||||||||||| |||| || || || || || Sbjct 96568 ATAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGA 96509 Query 65879 TCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAA--TCAGTAAAT 65936 || ||||||| ||| || || || || ||||| | ||| | ||| || || Sbjct 96508 ACGTGGAGCTACTCTCCCGTAGTACCCAGAAGGAAGAGCTAT-CTGAAATGTCGGTTTTC 96450 Query 65937 ACCAATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCT 65996 || | | || ||||||||| | | || ||| |||| || || || || ||||| || Sbjct 96449 ACAAGGGCCTTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCC 96390 Query 65997 GCAGC 66001 || || Sbjct 96389 GCGGC 96385 >seq17 Length=4188677 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | || ||||| ||||| || || | || || | || |||||||| | Sbjct 339068 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 339127 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || ||||||||||| | ||| |||||||| ||| Sbjct 339128 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 339187 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| ||||||| ||||| Sbjct 339188 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 339222 >seq317 Length=3209840 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 2110010 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 2110069 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 2110070 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 2110129 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 2110130 TTTACCTTGGATGCTGACTTCTAA 2110153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150917873592684